PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
Oruf01G0005280.1 Alkaloid CODM/T6ODM medium borderline
Oruf01G0007500.1 Alkaloid CODM/T6ODM medium borderline
Oruf01G0017270.1 Alkaloid CODM/T6ODM medium borderline
Oruf01G0020600.1 Alkaloid CODM/T6ODM medium borderline
Oruf01G0022980.1 Alkaloid CODM/T6ODM medium borderline
Oruf01G0034280.1 Alkaloid CODM/T6ODM medium borderline
Oruf02G0012390.1 Alkaloid CODM/T6ODM medium borderline
Oruf02G0012390.2 Alkaloid CODM/T6ODM medium borderline
Oruf02G0012390.3 Alkaloid CODM/T6ODM medium borderline
Oruf02G0014550.1 Alkaloid CODM/T6ODM medium borderline
Oruf02G0014550.2 Alkaloid CODM/T6ODM medium borderline
Oruf02G0016720.1 Alkaloid CODM/T6ODM low borderline
Oruf02G0016720.2 Alkaloid CODM/T6ODM low borderline
Oruf02G0026080.1 Alkaloid CODM/T6ODM medium borderline
Oruf02G0035090.1 Alkaloid CODM/T6ODM medium borderline
Oruf03G0001480.1 Alkaloid CODM/T6ODM medium borderline
Oruf03G0014050.1 Alkaloid CODM/T6ODM medium borderline
Oruf03G0023250.1 Alkaloid CODM/T6ODM medium borderline
Oruf03G0026930.1 Alkaloid CODM/T6ODM medium borderline
Oruf03G0043070.1 Alkaloid CODM/T6ODM medium borderline
Oruf03G0043300.1 Alkaloid CODM/T6ODM medium borderline
Oruf04G0020410.1 Alkaloid CODM/T6ODM medium borderline
Oruf04G0024360.1 Alkaloid CODM/T6ODM medium borderline
Oruf05G0002030.1 Alkaloid CODM/T6ODM medium borderline
Oruf05G0003430.1 Alkaloid CODM/T6ODM medium borderline
Oruf05G0004210.1 Alkaloid CODM/T6ODM medium borderline
Oruf05G0005400.1 Alkaloid CODM/T6ODM medium borderline
Oruf05G0007280.1 Alkaloid CODM/T6ODM low borderline
Oruf05G0007280.2 Alkaloid CODM/T6ODM medium borderline
Oruf05G0009730.1 Alkaloid CODM/T6ODM medium pass
Oruf05G0027200.1 Alkaloid CODM/T6ODM medium borderline
Oruf06G0004140.1 Alkaloid CODM/T6ODM medium borderline
Oruf06G0005060.1 Alkaloid CODM/T6ODM medium borderline
Oruf06G0005060.2 Alkaloid CODM/T6ODM medium borderline
Oruf06G0005060.3 Alkaloid CODM/T6ODM medium borderline
Oruf06G0005060.4 Alkaloid CODM/T6ODM medium borderline
Oruf06G0010010.1 Alkaloid CODM/T6ODM medium borderline
Oruf06G0020050.1 Alkaloid CODM/T6ODM medium borderline
Oruf06G0022890.1 Alkaloid CODM/T6ODM medium borderline
Oruf08G0015110.1 Alkaloid CODM/T6ODM medium borderline
Oruf08G0015150.1 Alkaloid CODM/T6ODM medium borderline
Oruf08G0015160.1 Alkaloid CODM/T6ODM medium borderline
Oruf08G0020270.1 Alkaloid CODM/T6ODM medium borderline
Oruf08G0025910.1 Alkaloid CODM/T6ODM medium borderline
Oruf09G0012590.1 Alkaloid CODM/T6ODM medium borderline
Oruf09G0013130.1 Alkaloid CODM/T6ODM medium borderline
Oruf09G0021710.1 Alkaloid CODM/T6ODM medium borderline
Oruf11G0001640.1 Alkaloid CODM/T6ODM medium borderline
Oruf11G0012540.1 Alkaloid CODM/T6ODM medium borderline