PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
Reset
Gene Pathway Family Confidence Status
Oruf01G0008750.1 Flavonoid FNS medium borderline
Oruf01G0008750.6 Flavonoid FNS medium borderline
Oruf01G0016200.1 Flavonoid FNS medium borderline
Oruf01G0020920.3 Flavonoid FNS medium borderline
Oruf01G0020940.1 Flavonoid FNS medium borderline
Oruf02G0000850.1 Flavonoid FNS low borderline
Oruf02G0005620.1 Flavonoid FNS medium borderline
Oruf02G0006520.1 Flavonoid FNS medium borderline
Oruf02G0006560.1 Flavonoid FNS medium borderline
Oruf02G0009110.1 Flavonoid FNS medium borderline
Oruf02G0009110.2 Flavonoid FNS medium borderline
Oruf02G0014650.1 Flavonoid FNS medium borderline
Oruf02G0018230.1 Flavonoid FNS medium borderline
Oruf02G0018330.1 Flavonoid FNS medium borderline
Oruf02G0018330.3 Flavonoid FNS medium borderline
Oruf02G0028900.1 Flavonoid FNS medium borderline
Oruf03G0025380.1 Flavonoid FNS medium borderline
Oruf03G0036190.2 Flavonoid FNS medium borderline
Oruf03G0041620.1 Flavonoid FNS medium borderline
Oruf04G0001530.1 Flavonoid FNS medium borderline
Oruf05G0017530.1 Flavonoid FNS medium borderline
Oruf05G0017540.1 Flavonoid FNS medium borderline
Oruf06G0006050.1 Flavonoid FNS low borderline
Oruf06G0010700.1 Flavonoid FNS medium borderline
Oruf06G0012670.1 Flavonoid FNS low borderline
Oruf06G0019570.1 Flavonoid FNS medium borderline
Oruf06G0019810.1 Flavonoid FNS medium borderline
Oruf06G0019810.2 Flavonoid FNS medium borderline
Oruf06G0019880.1 Flavonoid FNS medium borderline
Oruf06G0019880.2 Flavonoid FNS medium borderline
Oruf06G0019880.3 Flavonoid FNS medium borderline
Oruf06G0019880.4 Flavonoid FNS medium borderline
Oruf06G0019890.1 Flavonoid FNS medium borderline
Oruf07G0012980.1 Flavonoid FNS medium borderline
Oruf07G0016820.1 Flavonoid FNS medium borderline
Oruf07G0019660.1 Flavonoid FNS medium borderline
Oruf09G0007800.1 Flavonoid FNS low borderline
Oruf09G0018510.1 Flavonoid FNS medium borderline
Oruf10G0008540.1 Flavonoid FNS medium borderline
Oruf10G0011740.1 Flavonoid FNS medium borderline
Oruf11G0016230.1 Flavonoid FNS medium borderline
Oruf11G0016230.2 Flavonoid FNS medium borderline