PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
Oruf01G0015460.1 Phenylpropanoid CAD low borderline
Oruf01G0020190.1 Phenylpropanoid CAD medium borderline
Oruf02G0006740.1 Phenylpropanoid CAD medium pass
Oruf02G0016020.1 Phenylpropanoid CAD low borderline
Oruf02G0022200.2 Phenylpropanoid CAD low borderline
Oruf02G0022200.3 Phenylpropanoid CAD low borderline
Oruf02G0022200.4 Phenylpropanoid CAD low borderline
Oruf02G0022260.1 Phenylpropanoid CAD low borderline
Oruf03G0006040.1 Phenylpropanoid CAD low borderline
Oruf03G0008980.1 Phenylpropanoid CAD medium pass
Oruf03G0017770.1 Phenylpropanoid CAD low borderline
Oruf03G0017770.2 Phenylpropanoid CAD low borderline
Oruf03G0017780.1 Phenylpropanoid CAD low borderline
Oruf03G0018820.1 Phenylpropanoid CAD medium pass
Oruf03G0018830.1 Phenylpropanoid CAD low borderline
Oruf03G0018850.1 Phenylpropanoid CAD low borderline
Oruf03G0018870.1 Phenylpropanoid CAD low borderline
Oruf03G0022740.1 Phenylpropanoid CAD low borderline
Oruf03G0022740.2 Phenylpropanoid CAD low borderline
Oruf04G0000460.1 Phenylpropanoid CAD low borderline
Oruf04G0003560.1 Phenylpropanoid CAD low borderline
Oruf04G0005660.1 Phenylpropanoid CAD medium pass
Oruf04G0008940.1 Phenylpropanoid CAD low borderline
Oruf04G0008950.1 Phenylpropanoid CAD medium pass
Oruf04G0008990.1 Phenylpropanoid CAD low borderline
Oruf04G0009030.1 Phenylpropanoid CAD low borderline
Oruf04G0009080.1 Phenylpropanoid CAD low borderline
Oruf04G0009110.1 Phenylpropanoid CAD low borderline
Oruf04G0009140.1 Phenylpropanoid CAD low borderline
Oruf04G0009160.1 Phenylpropanoid CAD low borderline
Oruf04G0009170.1 Phenylpropanoid CAD low borderline
Oruf04G0009190.1 Phenylpropanoid CAD low borderline
Oruf04G0009200.1 Phenylpropanoid CAD low borderline
Oruf04G0009900.1 Phenylpropanoid CAD low borderline
Oruf04G0009940.1 Phenylpropanoid CAD low borderline
Oruf04G0026420.1 Phenylpropanoid CAD low borderline
Oruf04G0026420.2 Phenylpropanoid CAD low borderline
Oruf04G0026480.1 Phenylpropanoid CAD medium pass
Oruf04G0027790.1 Phenylpropanoid CAD medium borderline
Oruf04G0027800.1 Phenylpropanoid CAD medium borderline
Oruf05G0011690.1 Phenylpropanoid CAD medium pass
Oruf05G0011690.2 Phenylpropanoid CAD medium pass
Oruf05G0017150.1 Phenylpropanoid CAD low borderline
Oruf06G0015260.1 Phenylpropanoid CAD low borderline
Oruf06G0026620.1 Phenylpropanoid CAD medium borderline
Oruf07G0022070.1 Phenylpropanoid CAD low borderline
Oruf07G0022070.2 Phenylpropanoid CAD low borderline
Oruf07G0022070.3 Phenylpropanoid CAD low borderline
Oruf08G0000690.1 Phenylpropanoid CAD low borderline
Oruf08G0002740.1 Phenylpropanoid CAD low borderline