PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: RAS
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Gene Pathway Family Confidence Status
Oruf01G0000350.1 Rosmarinic Acid RAS medium pass
Oruf01G0000350.2 Rosmarinic Acid RAS medium pass
Oruf01G0005410.1 Rosmarinic Acid RAS low borderline
Oruf01G0005990.1 Rosmarinic Acid RAS medium pass
Oruf01G0008880.1 Rosmarinic Acid RAS low borderline
Oruf01G0016190.1 Rosmarinic Acid RAS medium pass
Oruf01G0017710.1 Rosmarinic Acid RAS medium pass
Oruf01G0025250.1 Rosmarinic Acid RAS low borderline
Oruf01G0025260.1 Rosmarinic Acid RAS low borderline
Oruf02G0001540.1 Rosmarinic Acid RAS low borderline
Oruf02G0013990.1 Rosmarinic Acid RAS low borderline
Oruf02G0025050.1 Rosmarinic Acid RAS medium pass
Oruf02G0033560.1 Rosmarinic Acid RAS low borderline
Oruf02G0040000.1 Rosmarinic Acid RAS low borderline
Oruf04G0003260.1 Rosmarinic Acid RAS low borderline
Oruf04G0018970.1 Rosmarinic Acid RAS medium pass
Oruf04G0018970.2 Rosmarinic Acid RAS medium pass
Oruf04G0026280.1 Rosmarinic Acid RAS low borderline
Oruf05G0001250.1 Rosmarinic Acid RAS low borderline
Oruf05G0005510.1 Rosmarinic Acid RAS low borderline
Oruf05G0023730.1 Rosmarinic Acid RAS low borderline
Oruf05G0023730.2 Rosmarinic Acid RAS low borderline
Oruf06G0003700.1 Rosmarinic Acid RAS low borderline
Oruf06G0005640.1 Rosmarinic Acid RAS medium pass
Oruf06G0005660.1 Rosmarinic Acid RAS low borderline
Oruf06G0028670.1 Rosmarinic Acid RAS medium pass
Oruf08G0006650.1 Rosmarinic Acid RAS medium pass
Oruf08G0024650.1 Rosmarinic Acid RAS medium pass
Oruf09G0011230.1 Rosmarinic Acid RAS medium pass
Oruf09G0019580.1 Rosmarinic Acid RAS medium pass
Oruf10G0000280.1 Rosmarinic Acid RAS low borderline
Oruf10G0000300.1 Rosmarinic Acid RAS low borderline
Oruf10G0000960.1 Rosmarinic Acid RAS low borderline
Oruf10G0006350.1 Rosmarinic Acid RAS medium pass
Oruf10G0008610.1 Rosmarinic Acid RAS low borderline
Oruf10G0008620.1 Rosmarinic Acid RAS low borderline
Oruf10G0008630.1 Rosmarinic Acid RAS low borderline
Oruf10G0015750.1 Rosmarinic Acid RAS medium pass
Oruf11G0004940.1 Rosmarinic Acid RAS medium pass
Oruf11G0015500.1 Rosmarinic Acid RAS medium pass