PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Oruf01G0015820.1 Rosmarinic Acid 4CL medium pass
Oruf01G0026510.1 Rosmarinic Acid 4CL low borderline
Oruf01G0027720.1 Rosmarinic Acid 4CL low borderline
Oruf01G0027720.2 Rosmarinic Acid 4CL low borderline
Oruf01G0029350.1 Rosmarinic Acid 4CL low borderline
Oruf01G0034670.1 Rosmarinic Acid 4CL low borderline
Oruf01G0034670.2 Rosmarinic Acid 4CL low borderline
Oruf01G0034670.3 Rosmarinic Acid 4CL low borderline
Oruf01G0043680.1 Rosmarinic Acid 4CL medium pass
Oruf01G0043680.2 Rosmarinic Acid 4CL medium pass
Oruf01G0043680.3 Rosmarinic Acid 4CL medium pass
Oruf01G0043680.4 Rosmarinic Acid 4CL medium pass
Oruf02G0001410.1 Rosmarinic Acid 4CL medium pass
Oruf02G0005950.1 Rosmarinic Acid 4CL medium pass
Oruf02G0019590.1 Rosmarinic Acid 4CL low borderline
Oruf02G0030250.1 Rosmarinic Acid 4CL medium pass
Oruf02G0039050.1 Rosmarinic Acid 4CL low borderline
Oruf03G0002130.1 Rosmarinic Acid 4CL medium pass
Oruf03G0002290.1 Rosmarinic Acid 4CL medium pass
Oruf03G0002410.1 Rosmarinic Acid 4CL low borderline
Oruf03G0003750.1 Rosmarinic Acid 4CL medium pass
Oruf03G0015040.1 Rosmarinic Acid 4CL medium pass
Oruf03G0015040.2 Rosmarinic Acid 4CL medium pass
Oruf03G0015040.3 Rosmarinic Acid 4CL medium pass
Oruf03G0042290.1 Rosmarinic Acid 4CL low borderline
Oruf03G0042290.2 Rosmarinic Acid 4CL low borderline
Oruf04G0008240.1 Rosmarinic Acid 4CL medium pass
Oruf04G0012560.1 Rosmarinic Acid 4CL low borderline
Oruf04G0012560.2 Rosmarinic Acid 4CL low borderline
Oruf04G0027350.1 Rosmarinic Acid 4CL low borderline
Oruf04G0030890.1 Rosmarinic Acid 4CL medium pass
Oruf04G0031540.1 Rosmarinic Acid 4CL medium pass
Oruf05G0002360.1 Rosmarinic Acid 4CL low borderline
Oruf05G0002360.2 Rosmarinic Acid 4CL low borderline
Oruf05G0012100.1 Rosmarinic Acid 4CL low borderline
Oruf05G0012100.2 Rosmarinic Acid 4CL low borderline
Oruf06G0003870.1 Rosmarinic Acid 4CL low borderline
Oruf06G0003870.2 Rosmarinic Acid 4CL low borderline
Oruf06G0003870.3 Rosmarinic Acid 4CL low borderline
Oruf06G0009610.1 Rosmarinic Acid 4CL medium pass
Oruf06G0009610.2 Rosmarinic Acid 4CL medium pass
Oruf06G0024730.1 Rosmarinic Acid 4CL medium pass
Oruf07G0010200.1 Rosmarinic Acid 4CL medium pass
Oruf07G0024730.1 Rosmarinic Acid 4CL medium pass
Oruf08G0002150.1 Rosmarinic Acid 4CL low borderline
Oruf08G0002920.1 Rosmarinic Acid 4CL medium pass
Oruf08G0008520.1 Rosmarinic Acid 4CL medium pass
Oruf09G0020590.1 Rosmarinic Acid 4CL medium pass
Oruf10G0020780.1 Rosmarinic Acid 4CL medium pass
Oruf11G0002840.1 Rosmarinic Acid 4CL low borderline