PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Oruf11G0002840.2 Rosmarinic Acid 4CL low borderline
Oruf11G0004270.1 Rosmarinic Acid 4CL low borderline
Oruf11G0017940.1 Rosmarinic Acid 4CL low borderline
Oruf11G0017940.2 Rosmarinic Acid 4CL low borderline
Oruf12G0003060.1 Rosmarinic Acid 4CL low borderline
Oruf12G0003060.2 Rosmarinic Acid 4CL low borderline
Oruf12G0003060.3 Rosmarinic Acid 4CL low borderline
Oruf12G0004750.1 Rosmarinic Acid 4CL medium pass
Oruf12G0004750.2 Rosmarinic Acid 4CL medium pass
Oruf12G0004750.3 Rosmarinic Acid 4CL medium pass
Oruf01G0005800.2 Rosmarinic Acid C4H low borderline
Oruf01G0006720.1 Rosmarinic Acid C4H low borderline
Oruf01G0007600.1 Rosmarinic Acid C4H low borderline
Oruf01G0007620.1 Rosmarinic Acid C4H low borderline
Oruf01G0008740.1 Rosmarinic Acid C4H medium pass
Oruf01G0008750.1 Rosmarinic Acid C4H low borderline
Oruf01G0008750.2 Rosmarinic Acid C4H low borderline
Oruf01G0008750.3 Rosmarinic Acid C4H low borderline
Oruf01G0008750.4 Rosmarinic Acid C4H low borderline
Oruf01G0008750.5 Rosmarinic Acid C4H medium pass
Oruf01G0008750.6 Rosmarinic Acid C4H low borderline
Oruf01G0008750.7 Rosmarinic Acid C4H medium pass
Oruf01G0016200.1 Rosmarinic Acid C4H low borderline
Oruf01G0017480.1 Rosmarinic Acid C4H medium pass
Oruf01G0018040.1 Rosmarinic Acid C4H low borderline
Oruf01G0020920.1 Rosmarinic Acid C4H medium pass
Oruf01G0020920.2 Rosmarinic Acid C4H medium pass
Oruf01G0020920.3 Rosmarinic Acid C4H low borderline
Oruf01G0020940.1 Rosmarinic Acid C4H low borderline
Oruf01G0021990.1 Rosmarinic Acid C4H low borderline
Oruf01G0024290.1 Rosmarinic Acid C4H low borderline
Oruf01G0024300.1 Rosmarinic Acid C4H low borderline
Oruf01G0024300.2 Rosmarinic Acid C4H low borderline
Oruf01G0024300.3 Rosmarinic Acid C4H low borderline
Oruf01G0026000.1 Rosmarinic Acid C4H low borderline
Oruf01G0026010.1 Rosmarinic Acid C4H low borderline
Oruf01G0026010.2 Rosmarinic Acid C4H low borderline
Oruf01G0026010.3 Rosmarinic Acid C4H low borderline
Oruf01G0026020.1 Rosmarinic Acid C4H low borderline
Oruf01G0026020.2 Rosmarinic Acid C4H low borderline
Oruf01G0026020.3 Rosmarinic Acid C4H low borderline
Oruf01G0026030.1 Rosmarinic Acid C4H low borderline
Oruf01G0026030.2 Rosmarinic Acid C4H low borderline
Oruf01G0030590.1 Rosmarinic Acid C4H low borderline
Oruf01G0030600.1 Rosmarinic Acid C4H low borderline
Oruf01G0037270.1 Rosmarinic Acid C4H low borderline
Oruf01G0038280.1 Rosmarinic Acid C4H medium pass
Oruf01G0047500.1 Rosmarinic Acid C4H low borderline
Oruf01G0047500.2 Rosmarinic Acid C4H low borderline
Oruf02G0000730.2 Rosmarinic Acid C4H low borderline