PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
Oruf01G0017360.1 Phenylpropanoid LAC medium pass
Oruf01G0026390.1 Phenylpropanoid LAC medium pass
Oruf01G0038030.1 Phenylpropanoid LAC low borderline
Oruf01G0038810.1 Phenylpropanoid LAC medium pass
Oruf01G0039830.1 Phenylpropanoid LAC medium pass
Oruf01G0039840.1 Phenylpropanoid LAC medium pass
Oruf01G0039950.1 Phenylpropanoid LAC medium pass
Oruf01G0040400.1 Phenylpropanoid LAC low borderline
Oruf02G0034050.1 Phenylpropanoid LAC medium pass
Oruf03G0012770.1 Phenylpropanoid LAC medium pass
Oruf03G0014570.1 Phenylpropanoid LAC medium pass
Oruf04G0023040.1 Phenylpropanoid LAC low borderline
Oruf05G0020110.1 Phenylpropanoid LAC medium pass
Oruf05G0020130.1 Phenylpropanoid LAC medium pass
Oruf06G0000260.1 Phenylpropanoid LAC low borderline
Oruf06G0019700.1 Phenylpropanoid LAC medium pass
Oruf06G0019740.1 Phenylpropanoid LAC low borderline
Oruf06G0019740.2 Phenylpropanoid LAC low borderline
Oruf07G0000100.1 Phenylpropanoid LAC medium pass
Oruf07G0001270.1 Phenylpropanoid LAC low borderline
Oruf08G0003580.1 Phenylpropanoid LAC low borderline
Oruf09G0008000.1 Phenylpropanoid LAC medium pass
Oruf09G0016850.1 Phenylpropanoid LAC medium pass
Oruf10G0007260.1 Phenylpropanoid LAC medium pass
Oruf10G0011340.1 Phenylpropanoid LAC low borderline
Oruf10G0011520.1 Phenylpropanoid LAC medium pass
Oruf10G0011540.1 Phenylpropanoid LAC medium pass
Oruf11G0000470.1 Phenylpropanoid LAC medium pass
Oruf11G0009440.1 Phenylpropanoid LAC medium pass
Oruf11G0022620.1 Phenylpropanoid LAC medium pass
Oruf11G0022620.2 Phenylpropanoid LAC medium pass
Oruf11G0024950.1 Phenylpropanoid LAC medium pass
Oruf11G0025540.1 Phenylpropanoid LAC medium pass
Oruf12G0000600.1 Phenylpropanoid LAC medium pass
Oruf12G0000600.2 Phenylpropanoid LAC medium pass
Oruf12G0008370.1 Phenylpropanoid LAC medium pass
Oruf12G0008410.1 Phenylpropanoid LAC medium pass
Oruf12G0008420.1 Phenylpropanoid LAC medium pass