PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Oruf01G0005800.1 Alkaloid T3O medium pass
Oruf01G0005800.2 Alkaloid T3O medium pass
Oruf01G0006720.1 Alkaloid T3O medium pass
Oruf01G0007600.1 Alkaloid T3O low borderline
Oruf01G0007610.1 Alkaloid T3O low borderline
Oruf01G0007620.1 Alkaloid T3O medium pass
Oruf01G0008750.1 Alkaloid T3O medium borderline
Oruf01G0008750.6 Alkaloid T3O medium borderline
Oruf01G0008750.7 Alkaloid T3O medium borderline
Oruf01G0017480.1 Alkaloid T3O medium borderline
Oruf01G0020920.1 Alkaloid T3O medium borderline
Oruf01G0020920.2 Alkaloid T3O medium borderline
Oruf01G0020920.3 Alkaloid T3O medium borderline
Oruf01G0030590.1 Alkaloid T3O medium borderline
Oruf01G0037260.1 Alkaloid T3O low borderline
Oruf01G0037270.1 Alkaloid T3O medium pass
Oruf01G0037280.1 Alkaloid T3O low borderline
Oruf01G0037300.1 Alkaloid T3O medium pass
Oruf01G0040640.1 Alkaloid T3O low borderline
Oruf01G0040870.1 Alkaloid T3O medium pass
Oruf01G0047500.1 Alkaloid T3O medium pass
Oruf02G0000850.1 Alkaloid T3O low borderline
Oruf02G0006530.1 Alkaloid T3O medium borderline
Oruf02G0006540.1 Alkaloid T3O medium borderline
Oruf02G0006580.1 Alkaloid T3O medium borderline
Oruf02G0006590.2 Alkaloid T3O medium pass
Oruf02G0006590.3 Alkaloid T3O medium pass
Oruf02G0006600.1 Alkaloid T3O medium borderline
Oruf02G0006640.1 Alkaloid T3O medium borderline
Oruf02G0006650.1 Alkaloid T3O medium borderline
Oruf02G0006660.1 Alkaloid T3O medium borderline
Oruf02G0008770.1 Alkaloid T3O medium pass
Oruf02G0018220.1 Alkaloid T3O medium borderline
Oruf02G0018270.1 Alkaloid T3O medium borderline
Oruf02G0019870.1 Alkaloid T3O medium borderline
Oruf02G0022080.1 Alkaloid T3O medium borderline
Oruf02G0022110.1 Alkaloid T3O medium borderline
Oruf02G0022180.1 Alkaloid T3O medium borderline
Oruf02G0022240.1 Alkaloid T3O medium borderline
Oruf02G0022300.1 Alkaloid T3O medium borderline
Oruf02G0023850.1 Alkaloid T3O medium pass
Oruf02G0024280.1 Alkaloid T3O medium borderline
Oruf02G0028360.1 Alkaloid T3O low borderline
Oruf02G0030710.1 Alkaloid T3O medium pass
Oruf02G0038660.2 Alkaloid T3O medium pass
Oruf02G0038660.3 Alkaloid T3O medium pass
Oruf02G0038660.4 Alkaloid T3O medium pass
Oruf03G0000780.1 Alkaloid T3O medium borderline
Oruf03G0002750.1 Alkaloid T3O medium pass
Oruf03G0002860.1 Alkaloid T3O low borderline