PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Oruf01G0026010.4 Steroid BR6OX1/CYP85A1 medium borderline
Oruf01G0030600.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf02G0019870.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf02G0022230.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf02G0022240.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf02G0030710.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf04G0008970.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf04G0023620.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf05G0000130.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf06G0000630.2 Steroid BR6OX1/CYP85A1 medium borderline
Oruf06G0000630.4 Steroid BR6OX1/CYP85A1 medium borderline
Oruf06G0019860.2 Steroid BR6OX1/CYP85A1 low borderline
Oruf06G0019880.1 Steroid BR6OX1/CYP85A1 low borderline
Oruf06G0019880.3 Steroid BR6OX1/CYP85A1 low borderline
Oruf06G0019890.1 Steroid BR6OX1/CYP85A1 low borderline
Oruf06G0019890.2 Steroid BR6OX1/CYP85A1 low borderline
Oruf09G0013580.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf10G0005860.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf10G0016470.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf10G0016500.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf10G0016560.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf10G0016570.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf10G0016580.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf10G0016600.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf11G0010460.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf12G0009770.1 Steroid BR6OX1/CYP85A1 medium borderline
Oruf01G0005800.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf01G0008750.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf01G0008750.7 Steroid BR6OX2/CYP85A2 low borderline
Oruf01G0016200.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf01G0021990.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf01G0037260.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf01G0037280.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf01G0037300.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf01G0040640.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0000730.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0000730.3 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0006530.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0006590.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0006590.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0006590.3 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0006600.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0006650.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0006660.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0008770.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0009110.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0009110.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0018270.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0018330.3 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0022080.1 Steroid BR6OX2/CYP85A2 low borderline