PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Oruf02G0022110.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0022180.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0022300.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0023850.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0024280.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf02G0028360.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0002470.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0002750.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0002860.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0004870.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0022100.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0025360.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0025460.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0025540.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0026020.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0028670.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0031550.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf03G0034810.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf04G0000040.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf04G0003510.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf04G0022900.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf04G0023830.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf05G0005660.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf05G0019220.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf05G0022340.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0001790.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0013710.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0013850.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0013960.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0014890.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0015330.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0015330.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0016670.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0016890.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0019570.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0019830.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0019860.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0021280.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0022190.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0023710.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0023720.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0023770.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0023780.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0023780.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0023800.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf06G0023800.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf07G0010660.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf07G0012950.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf07G0012980.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf07G0025100.1 Steroid BR6OX2/CYP85A2 low borderline