PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Oruf01G0005150.1 Flavonoid UFGT medium pass
Oruf01G0005160.1 Flavonoid UFGT medium pass
Oruf01G0005160.2 Flavonoid UFGT medium pass
Oruf01G0005460.1 Flavonoid UFGT medium pass
Oruf01G0024060.1 Flavonoid UFGT high pass
Oruf01G0025580.1 Flavonoid UFGT medium pass
Oruf01G0025590.1 Flavonoid UFGT high pass
Oruf01G0025600.1 Flavonoid UFGT medium pass
Oruf01G0026660.1 Flavonoid UFGT high pass
Oruf01G0026690.1 Flavonoid UFGT high pass
Oruf01G0029650.1 Flavonoid UFGT medium pass
Oruf01G0030380.1 Flavonoid UFGT medium pass
Oruf01G0032780.1 Flavonoid UFGT medium pass
Oruf01G0032800.1 Flavonoid UFGT medium pass
Oruf01G0032810.1 Flavonoid UFGT medium pass
Oruf01G0032830.1 Flavonoid UFGT medium pass
Oruf01G0037320.1 Flavonoid UFGT medium pass
Oruf01G0037340.1 Flavonoid UFGT medium pass
Oruf01G0041360.1 Flavonoid UFGT high pass
Oruf01G0041540.1 Flavonoid UFGT low borderline
Oruf01G0041670.1 Flavonoid UFGT medium pass
Oruf02G0006760.1 Flavonoid UFGT high pass
Oruf02G0008030.1 Flavonoid UFGT medium pass
Oruf02G0008040.1 Flavonoid UFGT medium pass
Oruf02G0008050.1 Flavonoid UFGT medium pass
Oruf02G0008270.1 Flavonoid UFGT low borderline
Oruf02G0008270.3 Flavonoid UFGT low borderline
Oruf02G0010160.1 Flavonoid UFGT high pass
Oruf02G0010200.1 Flavonoid UFGT medium pass
Oruf02G0010210.1 Flavonoid UFGT medium pass
Oruf02G0016610.1 Flavonoid UFGT low borderline
Oruf02G0016610.2 Flavonoid UFGT low borderline
Oruf02G0016610.3 Flavonoid UFGT low borderline
Oruf02G0016610.4 Flavonoid UFGT low borderline
Oruf02G0017780.1 Flavonoid UFGT high pass
Oruf02G0022690.1 Flavonoid UFGT high pass
Oruf02G0022710.1 Flavonoid UFGT medium pass
Oruf02G0022720.1 Flavonoid UFGT medium pass
Oruf02G0026310.1 Flavonoid UFGT medium pass
Oruf02G0034410.1 Flavonoid UFGT high pass
Oruf02G0034410.2 Flavonoid UFGT high pass
Oruf02G0034410.3 Flavonoid UFGT high pass
Oruf02G0034420.1 Flavonoid UFGT medium pass
Oruf02G0037650.1 Flavonoid UFGT high pass
Oruf03G0008110.1 Flavonoid UFGT medium pass
Oruf03G0018610.1 Flavonoid UFGT medium pass
Oruf03G0026210.1 Flavonoid UFGT medium pass
Oruf03G0029650.1 Flavonoid UFGT high pass
Oruf03G0031470.1 Flavonoid UFGT medium pass
Oruf03G0032060.1 Flavonoid UFGT medium pass