PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
Oruf01G0008750.6 Steroid CYP90D1 low borderline
Oruf01G0018040.1 Steroid CYP90D1 low borderline
Oruf01G0048230.1 Steroid CYP90D1 low borderline
Oruf02G0012270.1 Steroid CYP90D1 low borderline
Oruf02G0016580.1 Steroid CYP90D1 low borderline
Oruf03G0000780.1 Steroid CYP90D1 low borderline
Oruf03G0010850.1 Steroid CYP90D1 low borderline
Oruf03G0016660.1 Steroid CYP90D1 low borderline
Oruf03G0016660.2 Steroid CYP90D1 low borderline
Oruf03G0016660.3 Steroid CYP90D1 low borderline
Oruf03G0025990.1 Steroid CYP90D1 medium borderline
Oruf03G0042540.1 Steroid CYP90D1 low borderline
Oruf04G0001500.1 Steroid CYP90D1 low borderline
Oruf04G0001530.1 Steroid CYP90D1 low borderline
Oruf04G0016810.1 Steroid CYP90D1 medium borderline
Oruf04G0023590.1 Steroid CYP90D1 medium borderline
Oruf05G0016930.1 Steroid CYP90D1 low borderline
Oruf05G0016930.2 Steroid CYP90D1 low borderline
Oruf07G0011820.1 Steroid CYP90D1 low borderline
Oruf07G0015100.1 Steroid CYP90D1 medium borderline
Oruf07G0016710.1 Steroid CYP90D1 medium borderline
Oruf07G0016730.1 Steroid CYP90D1 medium borderline
Oruf07G0016810.1 Steroid CYP90D1 medium pass
Oruf07G0016810.2 Steroid CYP90D1 medium borderline
Oruf07G0016820.1 Steroid CYP90D1 medium borderline
Oruf07G0022200.1 Steroid CYP90D1 low borderline
Oruf07G0025260.1 Steroid CYP90D1 low borderline
Oruf07G0027250.1 Steroid CYP90D1 low borderline
Oruf08G0017240.1 Steroid CYP90D1 low borderline
Oruf10G0004040.1 Steroid CYP90D1 low borderline
Oruf10G0007390.1 Steroid CYP90D1 low borderline
Oruf11G0001140.1 Steroid CYP90D1 low borderline
Oruf11G0002600.1 Steroid CYP90D1 medium borderline
Oruf12G0001290.1 Steroid CYP90D1 low borderline
Oruf12G0002690.1 Steroid CYP90D1 medium borderline