PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status
Oruf01G0015460.1 Terpenoid TPS medium pass
Oruf01G0025000.1 Terpenoid TPS medium pass
Oruf02G0001630.1 Terpenoid TPS medium pass
Oruf02G0012290.1 Terpenoid TPS medium pass
Oruf02G0016020.1 Terpenoid TPS medium pass
Oruf02G0016030.1 Terpenoid TPS medium pass
Oruf02G0022200.1 Terpenoid TPS medium pass
Oruf02G0022200.2 Terpenoid TPS medium pass
Oruf02G0022200.3 Terpenoid TPS medium pass
Oruf02G0022200.4 Terpenoid TPS medium pass
Oruf02G0022250.1 Terpenoid TPS medium pass
Oruf02G0022260.1 Terpenoid TPS medium pass
Oruf02G0022290.1 Terpenoid TPS medium pass
Oruf02G0022310.1 Terpenoid TPS medium pass
Oruf03G0017770.1 Terpenoid TPS medium pass
Oruf03G0017770.2 Terpenoid TPS medium pass
Oruf03G0017780.1 Terpenoid TPS medium pass
Oruf03G0018780.1 Terpenoid TPS medium pass
Oruf03G0018820.1 Terpenoid TPS medium pass
Oruf03G0018830.1 Terpenoid TPS medium pass
Oruf03G0018840.1 Terpenoid TPS medium pass
Oruf03G0018850.1 Terpenoid TPS medium pass
Oruf03G0018870.1 Terpenoid TPS medium pass
Oruf03G0022740.1 Terpenoid TPS medium pass
Oruf03G0022740.2 Terpenoid TPS medium pass
Oruf04G0000460.1 Terpenoid TPS medium pass
Oruf04G0003500.1 Terpenoid TPS medium pass
Oruf04G0003500.2 Terpenoid TPS medium pass
Oruf04G0003560.1 Terpenoid TPS medium pass
Oruf04G0008940.1 Terpenoid TPS medium pass
Oruf04G0008950.1 Terpenoid TPS medium pass
Oruf04G0008990.1 Terpenoid TPS medium pass
Oruf04G0009030.1 Terpenoid TPS medium pass
Oruf04G0009080.1 Terpenoid TPS medium pass
Oruf04G0009110.1 Terpenoid TPS medium pass
Oruf04G0009140.1 Terpenoid TPS medium pass
Oruf04G0009160.1 Terpenoid TPS medium pass
Oruf04G0009170.1 Terpenoid TPS medium pass
Oruf04G0009190.1 Terpenoid TPS medium pass
Oruf04G0009200.1 Terpenoid TPS medium pass
Oruf04G0026420.1 Terpenoid TPS low borderline
Oruf04G0026420.2 Terpenoid TPS low borderline
Oruf05G0009760.1 Terpenoid TPS medium pass
Oruf05G0011690.1 Terpenoid TPS medium pass
Oruf05G0011690.2 Terpenoid TPS medium pass
Oruf06G0015260.1 Terpenoid TPS medium pass
Oruf07G0006720.1 Terpenoid TPS low borderline
Oruf08G0002740.1 Terpenoid TPS medium pass
Oruf08G0004530.1 Terpenoid TPS medium pass
Oruf08G0004530.2 Terpenoid TPS low borderline