PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Oruf01G0000740.1 Terpenoid AACT medium borderline
Oruf02G0007440.1 Terpenoid AACT low borderline
Oruf02G0007440.2 Terpenoid AACT low borderline
Oruf02G0038630.1 Terpenoid AACT medium borderline
Oruf09G0002500.1 Terpenoid AACT medium borderline
Oruf09G0002500.2 Terpenoid AACT medium borderline
Oruf09G0002500.3 Terpenoid AACT medium borderline
Oruf10G0012720.1 Terpenoid AACT medium borderline
Oruf10G0012720.2 Terpenoid AACT medium borderline
Oruf01G0000350.1 Terpenoid BAHD medium pass
Oruf01G0000350.2 Terpenoid BAHD medium pass
Oruf01G0003910.1 Terpenoid BAHD low borderline
Oruf01G0005410.1 Terpenoid BAHD medium pass
Oruf01G0005990.1 Terpenoid BAHD medium pass
Oruf01G0007800.1 Terpenoid BAHD low borderline
Oruf01G0010350.1 Terpenoid BAHD medium pass
Oruf01G0012240.1 Terpenoid BAHD low borderline
Oruf01G0013390.1 Terpenoid BAHD medium pass
Oruf01G0013890.1 Terpenoid BAHD medium pass
Oruf01G0014270.1 Terpenoid BAHD low borderline
Oruf01G0015070.1 Terpenoid BAHD medium pass
Oruf01G0015260.1 Terpenoid BAHD medium pass
Oruf01G0015270.1 Terpenoid BAHD low borderline
Oruf01G0016190.1 Terpenoid BAHD medium pass
Oruf01G0017710.1 Terpenoid BAHD medium pass
Oruf01G0018890.1 Terpenoid BAHD medium pass
Oruf01G0023250.1 Terpenoid BAHD medium pass
Oruf01G0025250.1 Terpenoid BAHD medium pass
Oruf01G0025260.1 Terpenoid BAHD medium pass
Oruf01G0026070.1 Terpenoid BAHD low borderline
Oruf01G0026160.1 Terpenoid BAHD medium pass
Oruf01G0029330.1 Terpenoid BAHD medium pass
Oruf01G0029330.2 Terpenoid BAHD medium pass
Oruf01G0032010.1 Terpenoid BAHD medium pass
Oruf01G0032010.2 Terpenoid BAHD medium pass
Oruf01G0032010.3 Terpenoid BAHD medium pass
Oruf01G0035290.1 Terpenoid BAHD medium pass
Oruf01G0036010.2 Terpenoid BAHD medium pass
Oruf01G0039230.1 Terpenoid BAHD low borderline
Oruf01G0039980.1 Terpenoid BAHD medium pass
Oruf01G0039980.2 Terpenoid BAHD medium pass
Oruf01G0039980.3 Terpenoid BAHD medium pass
Oruf01G0040590.1 Terpenoid BAHD medium pass
Oruf01G0040650.1 Terpenoid BAHD medium pass
Oruf01G0041590.1 Terpenoid BAHD medium pass
Oruf01G0041590.2 Terpenoid BAHD medium pass
Oruf01G0045390.1 Terpenoid BAHD medium pass
Oruf01G0045440.1 Terpenoid BAHD medium pass
Oruf01G0046820.1 Terpenoid BAHD low borderline
Oruf02G0000470.1 Terpenoid BAHD low borderline