PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Oruf01G0005280.1 Flavonoid F3H medium borderline
Oruf01G0006180.1 Flavonoid F3H low borderline
Oruf01G0006180.2 Flavonoid F3H low borderline
Oruf01G0015250.1 Flavonoid F3H low borderline
Oruf01G0017270.1 Flavonoid F3H medium borderline
Oruf01G0022980.1 Flavonoid F3H medium borderline
Oruf01G0031340.1 Flavonoid F3H low borderline
Oruf01G0033370.1 Flavonoid F3H low borderline
Oruf01G0034280.1 Flavonoid F3H medium borderline
Oruf01G0039170.1 Flavonoid F3H medium borderline
Oruf01G0042540.1 Flavonoid F3H medium borderline
Oruf01G0046190.1 Flavonoid F3H medium borderline
Oruf02G0012390.1 Flavonoid F3H medium borderline
Oruf02G0012390.2 Flavonoid F3H medium borderline
Oruf02G0012390.3 Flavonoid F3H medium borderline
Oruf02G0014550.1 Flavonoid F3H medium borderline
Oruf02G0014550.2 Flavonoid F3H medium borderline
Oruf02G0023500.1 Flavonoid F3H medium pass
Oruf02G0035090.1 Flavonoid F3H medium borderline
Oruf02G0035420.1 Flavonoid F3H medium borderline
Oruf03G0001480.1 Flavonoid F3H medium borderline
Oruf03G0014050.1 Flavonoid F3H medium borderline
Oruf03G0023240.1 Flavonoid F3H medium borderline
Oruf03G0023250.1 Flavonoid F3H low borderline
Oruf03G0026930.1 Flavonoid F3H medium borderline
Oruf03G0031280.1 Flavonoid F3H medium borderline
Oruf03G0043030.1 Flavonoid F3H medium borderline
Oruf03G0043070.1 Flavonoid F3H medium pass
Oruf03G0043300.1 Flavonoid F3H medium borderline
Oruf04G0003670.1 Flavonoid F3H medium borderline
Oruf04G0012700.1 Flavonoid F3H low borderline
Oruf04G0017210.1 Flavonoid F3H medium pass
Oruf04G0020410.1 Flavonoid F3H medium borderline
Oruf04G0024350.1 Flavonoid F3H medium borderline
Oruf04G0024350.2 Flavonoid F3H medium borderline
Oruf04G0024360.1 Flavonoid F3H medium borderline
Oruf04G0028560.1 Flavonoid F3H medium borderline
Oruf04G0029850.1 Flavonoid F3H medium borderline
Oruf04G0030210.1 Flavonoid F3H medium borderline
Oruf04G0030240.1 Flavonoid F3H medium borderline
Oruf05G0002030.1 Flavonoid F3H medium borderline
Oruf05G0003420.1 Flavonoid F3H medium borderline
Oruf05G0003430.1 Flavonoid F3H medium borderline
Oruf05G0004210.1 Flavonoid F3H low borderline
Oruf05G0005400.1 Flavonoid F3H medium borderline
Oruf05G0007280.2 Flavonoid F3H medium pass
Oruf05G0009730.1 Flavonoid F3H low borderline
Oruf05G0017950.1 Flavonoid F3H medium pass
Oruf05G0023790.1 Flavonoid F3H medium borderline
Oruf05G0027200.1 Flavonoid F3H medium borderline