Oryza rufipogon (oryza_rufipogon)
Imported from atlas release summary for Oryza rufipogon.
1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1852
Candidate Genes
C4H
6.5%
C3'H/CYP98A
5.86%
BAHD
5.8%
UGT
4.19%
7DLGT
3.93%
UFGT
3.87%
4CL
3.59%
T3O
3.47%
Other Families
62.79%
More Families (97)
CYP76
167
3.33%
IFS
151
3.01%
POD
134
2.67%
NMT
129
2.57%
F3'H/CYP75B
126
2.51%
BR6OX2/CYP85A2
118
2.35%
STR
110
2.19%
DWF4/CYP90B1
104
2.07%
F3H
92
1.83%
CYP71
87
1.73%
SMT1/SMT2/SMT3
79
1.58%
CAS
70
1.4%
CAD
68
1.36%
SGD
64
1.28%
TPS
62
1.24%
PYKS
56
1.12%
GES
55
1.1%
G8O/G8H
54
1.08%
CSE
51
1.02%
SLS
50
1.0%
CODM/T6ODM
49
0.98%
CCR
48
0.96%
TRI/TRII
47
0.94%
IFR
44
0.88%
COMT
44
0.88%
FNS
42
0.84%
PMT
41
0.82%
HCT
40
0.8%
RAS
40
0.8%
T16H
39
0.78%
PAL
39
0.78%
LAC
38
0.76%
H6H
36
0.72%
F3'5'H/CYP75A
36
0.72%
CHS
35
0.7%
CYP90D1
35
0.7%
F5H/CYP84A
34
0.68%
NCS
33
0.66%
16OMT
33
0.66%
DFR
32
0.64%
ANR
30
0.6%
CPD/CYP90A1
29
0.58%
CYP51G1
29
0.58%
GS
28
0.56%
BR6OX1/CYP85A1
26
0.52%
BBE
20
0.4%
IO
20
0.4%
CNMT
19
0.38%
COR
19
0.38%
8HGO
17
0.34%
TAT
17
0.34%
MPO
15
0.3%
ANS/LDOX
14
0.28%
ROT3/CYP90C1
14
0.28%
7DLH
12
0.24%
CPR
12
0.24%
FPPS
12
0.24%
LAMT
11
0.22%
SQS/FDFT1
11
0.22%
GGPPS
11
0.22%
MVK
11
0.22%
CYP80B1
10
0.2%
CHI
10
0.2%
TYDC_DDC
9
0.18%
XMT_MXMT_DXMT
9
0.18%
CCoAOMT
9
0.18%
AACT
9
0.18%
SMO1/SMO2
8
0.16%
CYP719
7
0.14%
HPPR
6
0.12%
ADC
5
0.1%
FLS
5
0.1%
HYD1
5
0.1%
MVD
5
0.1%
DXS
5
0.1%
ODC
4
0.08%
TDC
4
0.08%
CPI1
4
0.08%
MCT/IspD
4
0.08%
MDS/IspF
4
0.08%
HMGR
4
0.08%
PMK
4
0.08%
CYP80F1
3
0.06%
ISY
3
0.06%
SQE
3
0.06%
DWF1
3
0.06%
IDI
3
0.06%
DET2
2
0.04%
FK
2
0.04%
DWF5
2
0.04%
HMGS
2
0.04%
HDR/IspH
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
DWF7
1
0.02%
DXR
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 533 | 19 | BAHD (205) | View species results |
| Alkaloid pathway | 450 | 23 | 7DLGT (73) | View species results |
| Flavonoid pathway | 296 | 14 | UFGT (175) | View species results |
| Phenylpropanoid pathway | 291 | 12 | POD (92) | View species results |
| Rosmarinic acid pathway | 149 | 7 | C4H (69) | View species results |
| Steroid pathway | 133 | 13 | SMT1/SMT2/SMT3 (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1945 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 371 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Oruf01G0003910.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf01G0007800.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf01G0015260.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf01G0015270.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf01G0018890.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf01G0026070.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf01G0035520.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf01G0035520.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf01G0039230.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf02G0001070.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf02G0016340.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf02G0026340.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf02G0029670.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf02G0036980.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf03G0002560.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf03G0006580.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf03G0008820.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf03G0011520.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf03G0020290.2 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf03G0020740.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf03G0020820.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf03G0020820.2 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf03G0020820.3 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf03G0034100.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf03G0034100.2 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf04G0003420.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf04G0008610.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf04G0008610.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf04G0012070.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf04G0020600.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf05G0004200.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf05G0009950.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf05G0009950.2 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf05G0026220.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf05G0028880.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf05G0028900.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf06G0005730.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf06G0009250.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf06G0017530.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf06G0029830.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf07G0006710.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf07G0006710.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf07G0014300.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf07G0025620.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf08G0025940.2 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf09G0013920.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Oruf10G0000060.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf10G0000060.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf10G0000070.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Oruf10G0000070.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |