PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status Best Target
Oruf01G0012590.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf01G0012590.2 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf01G0012590.3 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf01G0012590.4 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf01G0012590.5 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf01G0012590.6 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf01G0012590.7 Flavonoid DFR low borderline DFR__00002__sp_Q84KP0_DFRA_PYRCO
Oruf01G0038860.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf02G0006240.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf02G0037970.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf02G0038150.1 Flavonoid DFR medium pass DFR__00003__sp_Q9XES5_DFRA_MALDO
Oruf02G0038170.1 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf02G0038170.2 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf02G0038170.3 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf02G0038170.4 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf02G0038170.5 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf06G0022680.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf06G0022700.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf06G0024400.3 Flavonoid DFR medium borderline DFR__00003__sp_Q9XES5_DFRA_MALDO
Oruf06G0024400.4 Flavonoid DFR medium borderline DFR__00002__sp_Q84KP0_DFRA_PYRCO
Oruf06G0024400.6 Flavonoid DFR medium borderline DFR__00003__sp_Q9XES5_DFRA_MALDO
Oruf08G0022720.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf09G0001240.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf09G0003010.1 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf09G0003140.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf09G0015920.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf09G0015920.2 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf09G0015920.3 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf09G0015920.4 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf09G0015990.1 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf09G0015990.2 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
Oruf11G0019600.1 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH