PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
Oruf08G0000430.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0000460.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0000470.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0002190.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0003420.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0003430.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0009310.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0009340.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0009390.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0019450.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0022120.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0022130.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0022160.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0022170.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf08G0024980.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0003060.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0003090.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0003560.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0005760.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0012460.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0012480.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0012480.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0012490.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0012900.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0012910.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf09G0018510.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0003650.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0004070.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0004070.2 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0004660.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0005020.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0006560.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0009550.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0011740.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0014510.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0016270.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0017260.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0017270.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf10G0017280.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf11G0013700.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf11G0013780.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf11G0014590.1 Steroid BR6OX2/CYP85A2 medium borderline
Oruf12G0014790.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf12G0022410.1 Steroid BR6OX2/CYP85A2 low borderline
Oruf01G0037910.1 Steroid CAS medium pass
Oruf01G0037910.2 Steroid CAS medium pass
Oruf01G0037910.3 Steroid CAS medium pass
Oruf01G0049040.1 Steroid CAS medium pass
Oruf02G0003180.1 Steroid CAS medium pass
Oruf02G0003180.2 Steroid CAS medium pass