PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Oruf02G0000730.3 Rosmarinic Acid C4H low borderline
Oruf02G0000850.1 Rosmarinic Acid C4H low borderline
Oruf02G0005620.1 Rosmarinic Acid C4H low borderline
Oruf02G0006510.1 Rosmarinic Acid C4H low borderline
Oruf02G0006520.1 Rosmarinic Acid C4H low borderline
Oruf02G0006530.1 Rosmarinic Acid C4H medium pass
Oruf02G0006540.1 Rosmarinic Acid C4H low borderline
Oruf02G0006560.1 Rosmarinic Acid C4H low borderline
Oruf02G0006580.1 Rosmarinic Acid C4H low borderline
Oruf02G0006590.1 Rosmarinic Acid C4H low borderline
Oruf02G0006590.2 Rosmarinic Acid C4H low borderline
Oruf02G0006590.3 Rosmarinic Acid C4H low borderline
Oruf02G0006600.1 Rosmarinic Acid C4H low borderline
Oruf02G0006640.1 Rosmarinic Acid C4H low borderline
Oruf02G0006650.1 Rosmarinic Acid C4H low borderline
Oruf02G0006660.1 Rosmarinic Acid C4H low borderline
Oruf02G0007940.1 Rosmarinic Acid C4H low borderline
Oruf02G0008770.1 Rosmarinic Acid C4H low borderline
Oruf02G0009110.1 Rosmarinic Acid C4H low borderline
Oruf02G0009110.2 Rosmarinic Acid C4H low borderline
Oruf02G0012270.1 Rosmarinic Acid C4H low borderline
Oruf02G0014650.1 Rosmarinic Acid C4H low borderline
Oruf02G0016580.1 Rosmarinic Acid C4H medium pass
Oruf02G0016600.1 Rosmarinic Acid C4H low borderline
Oruf02G0018220.1 Rosmarinic Acid C4H medium pass
Oruf02G0018230.1 Rosmarinic Acid C4H low borderline
Oruf02G0018270.1 Rosmarinic Acid C4H low borderline
Oruf02G0018330.1 Rosmarinic Acid C4H low borderline
Oruf02G0018330.2 Rosmarinic Acid C4H low borderline
Oruf02G0018330.3 Rosmarinic Acid C4H low borderline
Oruf02G0019870.1 Rosmarinic Acid C4H medium pass
Oruf02G0022080.1 Rosmarinic Acid C4H medium pass
Oruf02G0022110.1 Rosmarinic Acid C4H medium pass
Oruf02G0022180.1 Rosmarinic Acid C4H medium pass
Oruf02G0022230.1 Rosmarinic Acid C4H low borderline
Oruf02G0022240.1 Rosmarinic Acid C4H low borderline
Oruf02G0022300.1 Rosmarinic Acid C4H low borderline
Oruf02G0024280.1 Rosmarinic Acid C4H low borderline
Oruf02G0030710.1 Rosmarinic Acid C4H low borderline
Oruf03G0000780.1 Rosmarinic Acid C4H medium pass
Oruf03G0002470.1 Rosmarinic Acid C4H medium pass
Oruf03G0002860.1 Rosmarinic Acid C4H low borderline
Oruf03G0004870.1 Rosmarinic Acid C4H low borderline
Oruf03G0009350.1 Rosmarinic Acid C4H low borderline
Oruf03G0010770.1 Rosmarinic Acid C4H low borderline
Oruf03G0010850.1 Rosmarinic Acid C4H medium pass
Oruf03G0016660.1 Rosmarinic Acid C4H low borderline
Oruf03G0016660.2 Rosmarinic Acid C4H low borderline
Oruf03G0016660.3 Rosmarinic Acid C4H low borderline
Oruf03G0019120.1 Rosmarinic Acid C4H low borderline