PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Oruf03G0019450.1 Rosmarinic Acid C4H low borderline
Oruf03G0022100.1 Rosmarinic Acid C4H low borderline
Oruf03G0024000.1 Rosmarinic Acid C4H low borderline
Oruf03G0024110.1 Rosmarinic Acid C4H low borderline
Oruf03G0025360.1 Rosmarinic Acid C4H low borderline
Oruf03G0025380.1 Rosmarinic Acid C4H low borderline
Oruf03G0025460.1 Rosmarinic Acid C4H low borderline
Oruf03G0025470.1 Rosmarinic Acid C4H medium pass
Oruf03G0025540.1 Rosmarinic Acid C4H medium pass
Oruf03G0026020.1 Rosmarinic Acid C4H low borderline
Oruf03G0027060.1 Rosmarinic Acid C4H low borderline
Oruf03G0028670.1 Rosmarinic Acid C4H medium pass
Oruf03G0034810.1 Rosmarinic Acid C4H low borderline
Oruf03G0036190.1 Rosmarinic Acid C4H medium pass
Oruf03G0036190.2 Rosmarinic Acid C4H low borderline
Oruf03G0036190.3 Rosmarinic Acid C4H low borderline
Oruf03G0041620.1 Rosmarinic Acid C4H low borderline
Oruf03G0042540.1 Rosmarinic Acid C4H medium pass
Oruf04G0000040.1 Rosmarinic Acid C4H medium pass
Oruf04G0001500.1 Rosmarinic Acid C4H low borderline
Oruf04G0001530.1 Rosmarinic Acid C4H low borderline
Oruf04G0003240.1 Rosmarinic Acid C4H low borderline
Oruf04G0003240.2 Rosmarinic Acid C4H low borderline
Oruf04G0003290.1 Rosmarinic Acid C4H low borderline
Oruf04G0003510.1 Rosmarinic Acid C4H low borderline
Oruf04G0003580.1 Rosmarinic Acid C4H low borderline
Oruf04G0006250.1 Rosmarinic Acid C4H low borderline
Oruf04G0008970.1 Rosmarinic Acid C4H medium pass
Oruf04G0012710.1 Rosmarinic Acid C4H low borderline
Oruf04G0016810.1 Rosmarinic Acid C4H low borderline
Oruf04G0017480.1 Rosmarinic Acid C4H low borderline
Oruf04G0017490.1 Rosmarinic Acid C4H low borderline
Oruf04G0021630.1 Rosmarinic Acid C4H low borderline
Oruf04G0023830.1 Rosmarinic Acid C4H low borderline
Oruf05G0000130.1 Rosmarinic Acid C4H low borderline
Oruf05G0005660.1 Rosmarinic Acid C4H low borderline
Oruf05G0006790.1 Rosmarinic Acid C4H low borderline
Oruf05G0012400.1 Rosmarinic Acid C4H medium pass
Oruf05G0014200.1 Rosmarinic Acid C4H medium pass
Oruf05G0014960.1 Rosmarinic Acid C4H low borderline
Oruf05G0016950.1 Rosmarinic Acid C4H low borderline
Oruf05G0017530.1 Rosmarinic Acid C4H low borderline
Oruf05G0018070.1 Rosmarinic Acid C4H medium pass
Oruf05G0021610.1 Rosmarinic Acid C4H low borderline
Oruf05G0022340.1 Rosmarinic Acid C4H medium pass
Oruf05G0023830.1 Rosmarinic Acid C4H low borderline
Oruf06G0000080.1 Rosmarinic Acid C4H low borderline
Oruf06G0000630.2 Rosmarinic Acid C4H low borderline
Oruf06G0000630.3 Rosmarinic Acid C4H low borderline
Oruf06G0000630.4 Rosmarinic Acid C4H low borderline