PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Family-Level Assignments
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Oruf07G0016710.1 Rosmarinic Acid C4H low borderline
Oruf07G0016780.1 Rosmarinic Acid C4H low borderline
Oruf07G0016790.1 Rosmarinic Acid C4H low borderline
Oruf07G0016790.2 Rosmarinic Acid C4H low borderline
Oruf07G0016790.3 Rosmarinic Acid C4H low borderline
Oruf07G0016790.4 Rosmarinic Acid C4H low borderline
Oruf07G0016790.5 Rosmarinic Acid C4H low borderline
Oruf07G0016810.1 Rosmarinic Acid C4H low borderline
Oruf07G0016810.2 Rosmarinic Acid C4H low borderline
Oruf07G0021630.2 Rosmarinic Acid C4H medium pass
Oruf07G0022200.1 Rosmarinic Acid C4H medium pass
Oruf07G0024450.1 Rosmarinic Acid C4H low borderline
Oruf07G0024450.3 Rosmarinic Acid C4H low borderline
Oruf07G0025100.1 Rosmarinic Acid C4H low borderline
Oruf07G0025260.1 Rosmarinic Acid C4H low borderline
Oruf07G0027250.1 Rosmarinic Acid C4H low borderline
Oruf08G0000430.1 Rosmarinic Acid C4H low borderline
Oruf08G0000450.1 Rosmarinic Acid C4H medium pass
Oruf08G0000460.1 Rosmarinic Acid C4H medium pass
Oruf08G0000470.1 Rosmarinic Acid C4H medium pass
Oruf08G0002190.1 Rosmarinic Acid C4H low borderline
Oruf08G0003420.1 Rosmarinic Acid C4H low borderline
Oruf08G0003430.1 Rosmarinic Acid C4H low borderline
Oruf08G0007420.1 Rosmarinic Acid C4H medium pass
Oruf08G0009310.1 Rosmarinic Acid C4H low borderline
Oruf08G0009340.1 Rosmarinic Acid C4H low borderline
Oruf08G0009390.1 Rosmarinic Acid C4H low borderline
Oruf08G0012910.1 Rosmarinic Acid C4H low borderline
Oruf08G0012910.2 Rosmarinic Acid C4H low borderline
Oruf08G0017240.1 Rosmarinic Acid C4H low borderline
Oruf08G0018820.1 Rosmarinic Acid C4H medium pass
Oruf08G0019450.1 Rosmarinic Acid C4H medium pass
Oruf08G0022120.1 Rosmarinic Acid C4H low borderline
Oruf08G0022130.1 Rosmarinic Acid C4H low borderline
Oruf08G0022160.1 Rosmarinic Acid C4H medium pass
Oruf08G0022170.1 Rosmarinic Acid C4H low borderline
Oruf08G0024980.1 Rosmarinic Acid C4H low borderline
Oruf08G0025030.1 Rosmarinic Acid C4H medium pass
Oruf09G0003060.1 Rosmarinic Acid C4H medium pass
Oruf09G0003090.1 Rosmarinic Acid C4H medium pass
Oruf09G0003560.1 Rosmarinic Acid C4H low borderline
Oruf09G0005760.1 Rosmarinic Acid C4H low borderline
Oruf09G0010300.1 Rosmarinic Acid C4H low borderline
Oruf09G0012460.1 Rosmarinic Acid C4H medium pass
Oruf09G0012480.1 Rosmarinic Acid C4H medium pass
Oruf09G0012480.2 Rosmarinic Acid C4H medium pass
Oruf09G0012490.1 Rosmarinic Acid C4H medium pass
Oruf09G0012900.1 Rosmarinic Acid C4H low borderline
Oruf09G0012910.1 Rosmarinic Acid C4H medium pass
Oruf09G0018510.1 Rosmarinic Acid C4H medium pass