PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Oruf09G0018520.1 Rosmarinic Acid C4H medium pass
Oruf10G0001950.1 Rosmarinic Acid C4H low borderline
Oruf10G0002140.1 Rosmarinic Acid C4H low borderline
Oruf10G0003630.1 Rosmarinic Acid C4H low borderline
Oruf10G0003650.1 Rosmarinic Acid C4H medium pass
Oruf10G0003720.1 Rosmarinic Acid C4H low borderline
Oruf10G0003760.1 Rosmarinic Acid C4H medium pass
Oruf10G0004040.1 Rosmarinic Acid C4H medium pass
Oruf10G0004070.1 Rosmarinic Acid C4H medium pass
Oruf10G0004070.2 Rosmarinic Acid C4H low borderline
Oruf10G0004660.1 Rosmarinic Acid C4H medium pass
Oruf10G0005020.1 Rosmarinic Acid C4H medium pass
Oruf10G0005750.1 Rosmarinic Acid C4H low borderline
Oruf10G0005860.1 Rosmarinic Acid C4H low borderline
Oruf10G0007390.1 Rosmarinic Acid C4H low borderline
Oruf10G0008540.1 Rosmarinic Acid C4H low borderline
Oruf10G0009550.1 Rosmarinic Acid C4H low borderline
Oruf10G0011740.1 Rosmarinic Acid C4H low borderline
Oruf10G0016270.1 Rosmarinic Acid C4H low borderline
Oruf10G0016400.1 Rosmarinic Acid C4H medium pass
Oruf10G0016470.1 Rosmarinic Acid C4H low borderline
Oruf10G0016490.1 Rosmarinic Acid C4H low borderline
Oruf10G0016500.1 Rosmarinic Acid C4H low borderline
Oruf10G0016560.1 Rosmarinic Acid C4H low borderline
Oruf10G0016570.1 Rosmarinic Acid C4H low borderline
Oruf10G0016580.1 Rosmarinic Acid C4H low borderline
Oruf10G0016600.1 Rosmarinic Acid C4H low borderline
Oruf10G0017260.1 Rosmarinic Acid C4H low borderline
Oruf10G0017270.1 Rosmarinic Acid C4H low borderline
Oruf10G0017280.1 Rosmarinic Acid C4H low borderline
Oruf11G0001140.1 Rosmarinic Acid C4H low borderline
Oruf11G0001150.1 Rosmarinic Acid C4H low borderline
Oruf11G0002600.1 Rosmarinic Acid C4H low borderline
Oruf11G0013700.1 Rosmarinic Acid C4H low borderline
Oruf11G0013780.1 Rosmarinic Acid C4H low borderline
Oruf11G0014590.1 Rosmarinic Acid C4H low borderline
Oruf11G0022270.1 Rosmarinic Acid C4H low borderline
Oruf12G0001290.1 Rosmarinic Acid C4H low borderline
Oruf12G0001290.4 Rosmarinic Acid C4H low borderline
Oruf12G0002660.1 Rosmarinic Acid C4H low borderline
Oruf12G0002690.1 Rosmarinic Acid C4H low borderline
Oruf12G0006290.1 Rosmarinic Acid C4H medium pass
Oruf12G0006500.1 Rosmarinic Acid C4H low borderline
Oruf12G0008780.1 Rosmarinic Acid C4H medium pass
Oruf12G0009770.1 Rosmarinic Acid C4H low borderline
Oruf12G0014790.1 Rosmarinic Acid C4H low borderline
Oruf12G0018760.1 Rosmarinic Acid C4H medium pass
Oruf12G0018820.1 Rosmarinic Acid C4H medium pass
Oruf12G0018830.1 Rosmarinic Acid C4H low borderline
Oruf12G0022410.1 Rosmarinic Acid C4H medium pass