PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status
Oruf01G0007890.1 Phenylpropanoid CSE medium pass
Oruf01G0014390.1 Phenylpropanoid CSE medium pass
Oruf01G0016050.1 Phenylpropanoid CSE low borderline
Oruf01G0016060.1 Phenylpropanoid CSE medium pass
Oruf01G0016070.1 Phenylpropanoid CSE medium pass
Oruf01G0024680.1 Phenylpropanoid CSE medium pass
Oruf01G0025160.1 Phenylpropanoid CSE medium pass
Oruf01G0025170.1 Phenylpropanoid CSE medium pass
Oruf01G0029780.1 Phenylpropanoid CSE medium pass
Oruf01G0040850.2 Phenylpropanoid CSE medium pass
Oruf01G0040850.3 Phenylpropanoid CSE medium pass
Oruf01G0043080.1 Phenylpropanoid CSE low borderline
Oruf01G0043080.2 Phenylpropanoid CSE low borderline
Oruf01G0043080.3 Phenylpropanoid CSE low borderline
Oruf01G0043080.4 Phenylpropanoid CSE low borderline
Oruf01G0044070.1 Phenylpropanoid CSE medium pass
Oruf01G0048510.1 Phenylpropanoid CSE medium pass
Oruf02G0008100.1 Phenylpropanoid CSE medium pass
Oruf02G0016740.1 Phenylpropanoid CSE medium pass
Oruf02G0022560.1 Phenylpropanoid CSE low borderline
Oruf02G0031570.1 Phenylpropanoid CSE medium pass
Oruf04G0004640.1 Phenylpropanoid CSE medium pass
Oruf04G0004760.1 Phenylpropanoid CSE medium pass
Oruf04G0004790.1 Phenylpropanoid CSE medium pass
Oruf04G0008270.1 Phenylpropanoid CSE medium pass
Oruf04G0027840.1 Phenylpropanoid CSE low borderline
Oruf04G0028960.1 Phenylpropanoid CSE medium pass
Oruf04G0030480.1 Phenylpropanoid CSE medium pass
Oruf04G0030500.1 Phenylpropanoid CSE medium pass
Oruf05G0000610.1 Phenylpropanoid CSE medium pass
Oruf05G0014340.1 Phenylpropanoid CSE medium pass
Oruf06G0020430.1 Phenylpropanoid CSE medium pass
Oruf07G0000570.1 Phenylpropanoid CSE medium pass
Oruf07G0014380.1 Phenylpropanoid CSE medium pass
Oruf07G0019570.1 Phenylpropanoid CSE medium pass
Oruf07G0021790.1 Phenylpropanoid CSE medium pass
Oruf08G0025660.1 Phenylpropanoid CSE medium pass
Oruf09G0005170.1 Phenylpropanoid CSE medium pass
Oruf09G0012530.1 Phenylpropanoid CSE medium pass
Oruf09G0016240.1 Phenylpropanoid CSE medium pass
Oruf09G0021060.1 Phenylpropanoid CSE medium pass
Oruf09G0021170.1 Phenylpropanoid CSE medium pass
Oruf09G0021180.1 Phenylpropanoid CSE medium pass
Oruf09G0021180.2 Phenylpropanoid CSE medium pass
Oruf09G0021180.3 Phenylpropanoid CSE medium pass
Oruf09G0021180.4 Phenylpropanoid CSE medium pass
Oruf09G0021190.1 Phenylpropanoid CSE low borderline
Oruf09G0021190.2 Phenylpropanoid CSE low borderline
Oruf09G0021190.3 Phenylpropanoid CSE low borderline
Oruf11G0008920.1 Phenylpropanoid CSE medium pass