PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.78% Alkaloid pathway 24.3% Flavonoid pathway 15.98% Phenylpropanoid pathway 15.71% Rosmarinic acid pathway 8.05% Steroid pathway 7.18%
Family Distribution
C4H 6.5% C3'H/CYP98A 5.86% BAHD 5.8% UGT 4.19% 7DLGT 3.93% UFGT 3.87% 4CL 3.59% T3O 3.47%
Other Families 62.79%
More Families (97)
CYP76 167 3.33% IFS 151 3.01% POD 134 2.67% NMT 129 2.57% F3'H/CYP75B 126 2.51% BR6OX2/CYP85A2 118 2.35% STR 110 2.19% DWF4/CYP90B1 104 2.07% F3H 92 1.83% CYP71 87 1.73% SMT1/SMT2/SMT3 79 1.58% CAS 70 1.4% CAD 68 1.36% SGD 64 1.28% TPS 62 1.24% PYKS 56 1.12% GES 55 1.1% G8O/G8H 54 1.08% CSE 51 1.02% SLS 50 1.0% CODM/T6ODM 49 0.98% CCR 48 0.96% TRI/TRII 47 0.94% IFR 44 0.88% COMT 44 0.88% FNS 42 0.84% PMT 41 0.82% HCT 40 0.8% RAS 40 0.8% T16H 39 0.78% PAL 39 0.78% LAC 38 0.76% H6H 36 0.72% F3'5'H/CYP75A 36 0.72% CHS 35 0.7% CYP90D1 35 0.7% F5H/CYP84A 34 0.68% NCS 33 0.66% 16OMT 33 0.66% DFR 32 0.64% ANR 30 0.6% CPD/CYP90A1 29 0.58% CYP51G1 29 0.58% GS 28 0.56% BR6OX1/CYP85A1 26 0.52% BBE 20 0.4% IO 20 0.4% CNMT 19 0.38% COR 19 0.38% 8HGO 17 0.34% TAT 17 0.34% MPO 15 0.3% ANS/LDOX 14 0.28% ROT3/CYP90C1 14 0.28% 7DLH 12 0.24% CPR 12 0.24% FPPS 12 0.24% LAMT 11 0.22% SQS/FDFT1 11 0.22% GGPPS 11 0.22% MVK 11 0.22% CYP80B1 10 0.2% CHI 10 0.2% TYDC_DDC 9 0.18% XMT_MXMT_DXMT 9 0.18% CCoAOMT 9 0.18% AACT 9 0.18% SMO1/SMO2 8 0.16% CYP719 7 0.14% HPPR 6 0.12% ADC 5 0.1% FLS 5 0.1% HYD1 5 0.1% MVD 5 0.1% DXS 5 0.1% ODC 4 0.08% TDC 4 0.08% CPI1 4 0.08% MCT/IspD 4 0.08% MDS/IspF 4 0.08% HMGR 4 0.08% PMK 4 0.08% CYP80F1 3 0.06% ISY 3 0.06% SQE 3 0.06% DWF1 3 0.06% IDI 3 0.06% DET2 2 0.04% FK 2 0.04% DWF5 2 0.04% HMGS 2 0.04% HDR/IspH 2 0.04% 6OMT_4OMT_SOMT 1 0.02% DWF7 1 0.02% DXR 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
Oruf10G0016560.1 Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Oruf10G0016570.1 Terpenoid CYP76 medium pass CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
Oruf10G0016580.1 Terpenoid CYP76 low borderline CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM
Oruf10G0016600.1 Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Oruf10G0017260.1 Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Oruf10G0017270.1 Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Oruf11G0010460.1 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Oruf11G0014590.1 Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Oruf11G0016230.1 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
Oruf11G0016230.2 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
Oruf12G0002660.1 Terpenoid CYP76 low borderline CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF
Oruf12G0006290.1 Terpenoid CYP76 medium pass CYP76__00007__sp_A0A1D8QMD2_C76K7_ROSOF
Oruf12G0006500.1 Terpenoid CYP76 medium borderline CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
Oruf12G0008780.1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Oruf12G0018760.1 Terpenoid CYP76 medium pass CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
Oruf12G0018820.1 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
Oruf12G0018830.1 Terpenoid CYP76 medium pass CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU