PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Oruf03G0036190.2 Steroid DWF4/CYP90B1 low borderline
Oruf03G0036190.3 Steroid DWF4/CYP90B1 low borderline
Oruf04G0002010.1 Steroid DWF4/CYP90B1 low borderline
Oruf04G0003580.1 Steroid DWF4/CYP90B1 low borderline
Oruf04G0006250.1 Steroid DWF4/CYP90B1 low borderline
Oruf04G0012710.1 Steroid DWF4/CYP90B1 low borderline
Oruf04G0017480.1 Steroid DWF4/CYP90B1 low borderline
Oruf04G0017490.1 Steroid DWF4/CYP90B1 low borderline
Oruf04G0021630.1 Steroid DWF4/CYP90B1 low borderline
Oruf05G0014960.1 Steroid DWF4/CYP90B1 low borderline
Oruf05G0016950.1 Steroid DWF4/CYP90B1 low borderline
Oruf05G0018070.1 Steroid DWF4/CYP90B1 low borderline
Oruf05G0021610.1 Steroid DWF4/CYP90B1 low borderline
Oruf06G0000080.1 Steroid DWF4/CYP90B1 low borderline
Oruf06G0000630.1 Steroid DWF4/CYP90B1 low borderline
Oruf06G0000630.3 Steroid DWF4/CYP90B1 medium borderline
Oruf06G0006050.1 Steroid DWF4/CYP90B1 low borderline
Oruf06G0006060.1 Steroid DWF4/CYP90B1 low borderline
Oruf06G0006810.1 Steroid DWF4/CYP90B1 low borderline
Oruf06G0019610.1 Steroid DWF4/CYP90B1 low borderline
Oruf06G0019810.2 Steroid DWF4/CYP90B1 low borderline
Oruf06G0019880.2 Steroid DWF4/CYP90B1 low borderline
Oruf06G0019880.4 Steroid DWF4/CYP90B1 low borderline
Oruf06G0023750.1 Steroid DWF4/CYP90B1 low borderline
Oruf06G0025860.1 Steroid DWF4/CYP90B1 low borderline
Oruf07G0010630.1 Steroid DWF4/CYP90B1 low borderline
Oruf07G0011770.1 Steroid DWF4/CYP90B1 low borderline
Oruf07G0024450.1 Steroid DWF4/CYP90B1 low borderline
Oruf07G0024450.2 Steroid DWF4/CYP90B1 low borderline
Oruf07G0024450.3 Steroid DWF4/CYP90B1 low borderline
Oruf08G0007420.1 Steroid DWF4/CYP90B1 low borderline
Oruf08G0018820.1 Steroid DWF4/CYP90B1 medium borderline
Oruf08G0019860.1 Steroid DWF4/CYP90B1 medium borderline
Oruf09G0010300.1 Steroid DWF4/CYP90B1 low borderline
Oruf09G0018520.1 Steroid DWF4/CYP90B1 low borderline
Oruf09G0018860.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0000940.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0001950.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0002140.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0003720.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0005750.1 Steroid DWF4/CYP90B1 low borderline
Oruf11G0001150.1 Steroid DWF4/CYP90B1 medium borderline
Oruf11G0002280.1 Steroid DWF4/CYP90B1 low borderline
Oruf11G0002290.1 Steroid DWF4/CYP90B1 low borderline
Oruf11G0003200.1 Steroid DWF4/CYP90B1 low borderline
Oruf11G0022270.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0001290.4 Steroid DWF4/CYP90B1 medium borderline
Oruf12G0003470.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0006290.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0006500.1 Steroid DWF4/CYP90B1 low borderline