PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Oruf09G0001630.1 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Oruf09G0001630.2 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Oruf09G0001630.3 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Oruf09G0001630.4 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Oruf09G0005300.1 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Oruf09G0005300.2 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Oruf09G0007610.1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Oruf09G0007610.2 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Oruf09G0007740.1 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Oruf09G0010370.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Oruf09G0010550.1 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Oruf09G0020670.1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Oruf10G0014720.1 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Oruf11G0001820.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Oruf11G0009040.2 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Oruf11G0011010.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Oruf11G0020310.1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Oruf11G0020310.2 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Oruf12G0001910.1 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Oruf12G0006480.1 Alkaloid NMT medium pass NMT__00051__sp_Q96565_AMNMT_HORVV
Oruf12G0006480.2 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
Oruf12G0006480.3 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
Oruf12G0006530.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
Oruf12G0006530.2 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
Oruf12G0007880.1 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
Oruf12G0020710.1 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Oruf12G0020710.2 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Oruf12G0020710.3 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Oruf12G0020710.4 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH