PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
Oruf03G0002880.1 Alkaloid T3O low borderline
Oruf03G0002900.1 Alkaloid T3O medium pass
Oruf03G0004870.1 Alkaloid T3O low borderline
Oruf03G0009350.1 Alkaloid T3O medium pass
Oruf03G0010770.1 Alkaloid T3O medium borderline
Oruf03G0016660.1 Alkaloid T3O medium pass
Oruf03G0016660.2 Alkaloid T3O medium pass
Oruf03G0016660.3 Alkaloid T3O medium pass
Oruf03G0025360.1 Alkaloid T3O medium borderline
Oruf03G0025460.1 Alkaloid T3O medium borderline
Oruf03G0025470.1 Alkaloid T3O medium borderline
Oruf03G0025540.1 Alkaloid T3O medium borderline
Oruf03G0025990.1 Alkaloid T3O medium pass
Oruf03G0028670.1 Alkaloid T3O medium borderline
Oruf03G0029150.1 Alkaloid T3O low borderline
Oruf03G0029160.1 Alkaloid T3O medium pass
Oruf03G0036600.1 Alkaloid T3O low borderline
Oruf03G0041620.1 Alkaloid T3O medium pass
Oruf03G0042540.1 Alkaloid T3O medium borderline
Oruf04G0000040.1 Alkaloid T3O medium borderline
Oruf04G0002010.1 Alkaloid T3O low borderline
Oruf04G0003510.1 Alkaloid T3O medium borderline
Oruf04G0003580.1 Alkaloid T3O medium borderline
Oruf04G0008970.1 Alkaloid T3O medium borderline
Oruf04G0017490.1 Alkaloid T3O medium borderline
Oruf04G0021630.1 Alkaloid T3O medium borderline
Oruf04G0022900.1 Alkaloid T3O low borderline
Oruf04G0023590.1 Alkaloid T3O medium pass
Oruf05G0005660.1 Alkaloid T3O medium pass
Oruf05G0006790.1 Alkaloid T3O medium pass
Oruf05G0007460.1 Alkaloid T3O medium pass
Oruf05G0018070.1 Alkaloid T3O medium borderline
Oruf05G0019220.1 Alkaloid T3O low borderline
Oruf05G0022340.1 Alkaloid T3O medium borderline
Oruf06G0000080.1 Alkaloid T3O medium borderline
Oruf06G0000630.2 Alkaloid T3O medium pass
Oruf06G0000630.3 Alkaloid T3O medium pass
Oruf06G0000630.4 Alkaloid T3O medium pass
Oruf06G0013710.1 Alkaloid T3O medium borderline
Oruf06G0013960.1 Alkaloid T3O medium borderline
Oruf06G0014890.1 Alkaloid T3O medium borderline
Oruf06G0016670.1 Alkaloid T3O medium borderline
Oruf06G0016890.1 Alkaloid T3O medium borderline
Oruf06G0019570.1 Alkaloid T3O medium pass
Oruf06G0019610.1 Alkaloid T3O low borderline
Oruf06G0022190.1 Alkaloid T3O medium borderline
Oruf06G0023720.1 Alkaloid T3O medium borderline
Oruf06G0023760.1 Alkaloid T3O medium borderline
Oruf06G0023770.2 Alkaloid T3O medium borderline
Oruf06G0023780.1 Alkaloid T3O medium borderline