PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
Oruf06G0023780.2 Alkaloid T3O medium pass
Oruf06G0025860.1 Alkaloid T3O medium borderline
Oruf06G0026450.1 Alkaloid T3O medium pass
Oruf07G0010630.1 Alkaloid T3O medium borderline
Oruf07G0010640.1 Alkaloid T3O medium borderline
Oruf07G0010660.1 Alkaloid T3O medium borderline
Oruf07G0012980.1 Alkaloid T3O medium borderline
Oruf07G0015100.1 Alkaloid T3O medium pass
Oruf07G0016710.1 Alkaloid T3O medium pass
Oruf07G0016730.1 Alkaloid T3O medium pass
Oruf07G0016780.1 Alkaloid T3O low borderline
Oruf07G0016790.1 Alkaloid T3O medium pass
Oruf07G0016790.2 Alkaloid T3O medium pass
Oruf07G0016790.3 Alkaloid T3O medium pass
Oruf07G0016790.4 Alkaloid T3O medium pass
Oruf07G0016790.5 Alkaloid T3O medium pass
Oruf07G0016810.1 Alkaloid T3O medium pass
Oruf07G0016810.2 Alkaloid T3O medium pass
Oruf07G0016820.1 Alkaloid T3O medium pass
Oruf07G0027250.1 Alkaloid T3O medium pass
Oruf08G0000460.1 Alkaloid T3O medium borderline
Oruf08G0000470.1 Alkaloid T3O medium borderline
Oruf08G0003420.1 Alkaloid T3O medium borderline
Oruf08G0007420.1 Alkaloid T3O medium borderline
Oruf08G0009310.1 Alkaloid T3O medium pass
Oruf08G0009340.1 Alkaloid T3O medium pass
Oruf08G0018820.1 Alkaloid T3O medium borderline
Oruf08G0019450.1 Alkaloid T3O medium borderline
Oruf08G0022120.1 Alkaloid T3O medium borderline
Oruf08G0022130.1 Alkaloid T3O medium borderline
Oruf08G0022160.1 Alkaloid T3O medium borderline
Oruf08G0022170.1 Alkaloid T3O medium borderline
Oruf08G0025030.1 Alkaloid T3O medium borderline
Oruf09G0003060.1 Alkaloid T3O medium borderline
Oruf09G0003090.1 Alkaloid T3O medium borderline
Oruf09G0003560.1 Alkaloid T3O medium borderline
Oruf09G0005760.1 Alkaloid T3O medium borderline
Oruf09G0012460.1 Alkaloid T3O medium borderline
Oruf09G0012480.1 Alkaloid T3O medium borderline
Oruf09G0012480.2 Alkaloid T3O medium borderline
Oruf09G0012490.1 Alkaloid T3O medium borderline
Oruf09G0012900.1 Alkaloid T3O medium borderline
Oruf09G0012910.1 Alkaloid T3O medium borderline
Oruf09G0018510.1 Alkaloid T3O medium borderline
Oruf09G0018520.1 Alkaloid T3O medium borderline
Oruf10G0000940.1 Alkaloid T3O low borderline
Oruf10G0003720.1 Alkaloid T3O medium borderline
Oruf10G0003760.1 Alkaloid T3O medium borderline
Oruf10G0004040.1 Alkaloid T3O medium borderline
Oruf10G0004070.1 Alkaloid T3O medium borderline