PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Oruf12G0006500.1 Terpenoid CYP76 medium borderline
Oruf12G0008780.1 Terpenoid CYP76 medium borderline
Oruf12G0018760.1 Terpenoid CYP76 medium pass
Oruf12G0018820.1 Terpenoid CYP76 medium pass
Oruf12G0018830.1 Terpenoid CYP76 medium pass
Oruf01G0000480.1 Terpenoid DXR high pass
Oruf05G0017110.1 Terpenoid DXS medium pass
Oruf06G0002770.1 Terpenoid DXS medium pass
Oruf06G0002770.2 Terpenoid DXS medium pass
Oruf07G0005710.1 Terpenoid DXS medium pass
Oruf11G0013480.1 Terpenoid DXS low borderline
Oruf01G0030270.1 Terpenoid FPPS low borderline
Oruf01G0030680.1 Terpenoid FPPS medium pass
Oruf01G0040760.1 Terpenoid FPPS medium pass
Oruf02G0039000.1 Terpenoid FPPS low borderline
Oruf02G0039000.2 Terpenoid FPPS low borderline
Oruf04G0029410.1 Terpenoid FPPS medium pass
Oruf04G0029410.2 Terpenoid FPPS medium pass
Oruf04G0029430.1 Terpenoid FPPS medium pass
Oruf05G0008680.1 Terpenoid FPPS low borderline
Oruf05G0025830.1 Terpenoid FPPS medium pass
Oruf06G0004460.1 Terpenoid FPPS medium pass
Oruf07G0022510.1 Terpenoid FPPS medium pass
Oruf01G0010090.1 Terpenoid GGPPS medium borderline
Oruf03G0042100.1 Terpenoid GGPPS low borderline
Oruf05G0028860.1 Terpenoid GGPPS medium borderline
Oruf06G0026300.1 Terpenoid GGPPS medium borderline
Oruf07G0020640.1 Terpenoid GGPPS medium borderline
Oruf07G0020640.2 Terpenoid GGPPS medium borderline
Oruf08G0006000.1 Terpenoid GGPPS medium borderline
Oruf08G0006000.2 Terpenoid GGPPS medium borderline
Oruf08G0006000.3 Terpenoid GGPPS medium borderline
Oruf12G0008910.1 Terpenoid GGPPS medium borderline
Oruf12G0008910.2 Terpenoid GGPPS medium borderline
Oruf03G0034180.1 Terpenoid HDR/IspH high pass
Oruf03G0034190.1 Terpenoid HDR/IspH high pass
Oruf02G0024480.1 Terpenoid HDS/IspG high pass
Oruf02G0031460.1 Terpenoid HMGR medium pass
Oruf08G0014640.1 Terpenoid HMGR low borderline
Oruf08G0022540.1 Terpenoid HMGR medium pass
Oruf09G0015930.1 Terpenoid HMGR medium pass
Oruf03G0001230.1 Terpenoid HMGS high pass
Oruf09G0017960.1 Terpenoid HMGS high pass
Oruf05G0017420.1 Terpenoid IDI medium pass
Oruf07G0018350.1 Terpenoid IDI medium pass
Oruf12G0003640.2 Terpenoid IDI low borderline
Oruf01G0042780.1 Terpenoid MCT/IspD high pass
Oruf04G0026560.1 Terpenoid MCT/IspD low borderline
Oruf04G0026560.2 Terpenoid MCT/IspD low borderline
Oruf11G0019410.1 Terpenoid MCT/IspD low borderline