PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Oruf10G0011540.1 Phenylpropanoid LAC medium pass
Oruf11G0000470.1 Phenylpropanoid LAC medium pass
Oruf11G0009440.1 Phenylpropanoid LAC medium pass
Oruf11G0022620.1 Phenylpropanoid LAC medium pass
Oruf11G0022620.2 Phenylpropanoid LAC medium pass
Oruf11G0024950.1 Phenylpropanoid LAC medium pass
Oruf11G0025540.1 Phenylpropanoid LAC medium pass
Oruf12G0000600.1 Phenylpropanoid LAC medium pass
Oruf12G0000600.2 Phenylpropanoid LAC medium pass
Oruf12G0008370.1 Phenylpropanoid LAC medium pass
Oruf12G0008410.1 Phenylpropanoid LAC medium pass
Oruf12G0008420.1 Phenylpropanoid LAC medium pass
Oruf02G0025880.1 Phenylpropanoid PAL high pass
Oruf02G0025890.1 Phenylpropanoid PAL high pass
Oruf02G0025900.1 Phenylpropanoid PAL high pass
Oruf02G0025910.1 Phenylpropanoid PAL high pass
Oruf04G0020190.1 Phenylpropanoid PAL medium pass
Oruf04G0020220.1 Phenylpropanoid PAL high pass
Oruf04G0020240.1 Phenylpropanoid PAL high pass
Oruf05G0003580.1 Phenylpropanoid PAL low borderline
Oruf05G0018240.1 Phenylpropanoid PAL high pass
Oruf08G0011240.1 Phenylpropanoid PAL low borderline
Oruf11G0025600.1 Phenylpropanoid PAL high pass
Oruf12G0012450.1 Phenylpropanoid PAL medium pass
Oruf12G0015200.1 Phenylpropanoid PAL high pass
Oruf01G0011360.1 Phenylpropanoid POD medium pass
Oruf01G0011670.1 Phenylpropanoid POD medium pass
Oruf01G0011960.1 Phenylpropanoid POD medium pass
Oruf01G0011960.2 Phenylpropanoid POD medium pass
Oruf01G0013160.1 Phenylpropanoid POD low borderline
Oruf01G0017530.1 Phenylpropanoid POD medium pass
Oruf01G0029020.1 Phenylpropanoid POD medium pass
Oruf01G0035720.1 Phenylpropanoid POD medium pass
Oruf01G0037030.1 Phenylpropanoid POD low borderline
Oruf01G0047880.1 Phenylpropanoid POD low borderline
Oruf02G0005380.1 Phenylpropanoid POD medium pass
Oruf02G0007090.1 Phenylpropanoid POD medium pass
Oruf02G0010060.1 Phenylpropanoid POD low borderline
Oruf02G0010100.1 Phenylpropanoid POD low borderline
Oruf02G0019490.1 Phenylpropanoid POD low borderline
Oruf02G0020380.1 Phenylpropanoid POD low borderline
Oruf02G0020380.2 Phenylpropanoid POD low borderline
Oruf02G0021230.1 Phenylpropanoid POD medium pass
Oruf02G0025310.1 Phenylpropanoid POD low borderline
Oruf02G0025310.2 Phenylpropanoid POD low borderline
Oruf02G0025310.3 Phenylpropanoid POD low borderline
Oruf02G0025310.4 Phenylpropanoid POD low borderline
Oruf02G0025310.5 Phenylpropanoid POD low borderline
Oruf02G0025310.6 Phenylpropanoid POD low borderline
Oruf02G0025310.7 Phenylpropanoid POD low borderline