Oryza rufipogon (oryza_rufipogon)
Imported from atlas release summary for Oryza rufipogon.
2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5015
Family-Level Calls
C4H
6.5%
C3'H/CYP98A
5.86%
BAHD
5.8%
UGT
4.19%
7DLGT
3.93%
UFGT
3.87%
4CL
3.59%
T3O
3.47%
Other Families
62.79%
More Families (97)
CYP76
167
3.33%
IFS
151
3.01%
POD
134
2.67%
NMT
129
2.57%
F3'H/CYP75B
126
2.51%
BR6OX2/CYP85A2
118
2.35%
STR
110
2.19%
DWF4/CYP90B1
104
2.07%
F3H
92
1.83%
CYP71
87
1.73%
SMT1/SMT2/SMT3
79
1.58%
CAS
70
1.4%
CAD
68
1.36%
SGD
64
1.28%
TPS
62
1.24%
PYKS
56
1.12%
GES
55
1.1%
G8O/G8H
54
1.08%
CSE
51
1.02%
SLS
50
1.0%
CODM/T6ODM
49
0.98%
CCR
48
0.96%
TRI/TRII
47
0.94%
IFR
44
0.88%
COMT
44
0.88%
FNS
42
0.84%
PMT
41
0.82%
HCT
40
0.8%
RAS
40
0.8%
T16H
39
0.78%
PAL
39
0.78%
LAC
38
0.76%
H6H
36
0.72%
F3'5'H/CYP75A
36
0.72%
CHS
35
0.7%
CYP90D1
35
0.7%
F5H/CYP84A
34
0.68%
NCS
33
0.66%
16OMT
33
0.66%
DFR
32
0.64%
ANR
30
0.6%
CPD/CYP90A1
29
0.58%
CYP51G1
29
0.58%
GS
28
0.56%
BR6OX1/CYP85A1
26
0.52%
BBE
20
0.4%
IO
20
0.4%
CNMT
19
0.38%
COR
19
0.38%
8HGO
17
0.34%
TAT
17
0.34%
MPO
15
0.3%
ANS/LDOX
14
0.28%
ROT3/CYP90C1
14
0.28%
7DLH
12
0.24%
CPR
12
0.24%
FPPS
12
0.24%
LAMT
11
0.22%
SQS/FDFT1
11
0.22%
GGPPS
11
0.22%
MVK
11
0.22%
CYP80B1
10
0.2%
CHI
10
0.2%
TYDC_DDC
9
0.18%
XMT_MXMT_DXMT
9
0.18%
CCoAOMT
9
0.18%
AACT
9
0.18%
SMO1/SMO2
8
0.16%
CYP719
7
0.14%
HPPR
6
0.12%
ADC
5
0.1%
FLS
5
0.1%
HYD1
5
0.1%
MVD
5
0.1%
DXS
5
0.1%
ODC
4
0.08%
TDC
4
0.08%
CPI1
4
0.08%
MCT/IspD
4
0.08%
MDS/IspF
4
0.08%
HMGR
4
0.08%
PMK
4
0.08%
CYP80F1
3
0.06%
ISY
3
0.06%
SQE
3
0.06%
DWF1
3
0.06%
IDI
3
0.06%
DET2
2
0.04%
FK
2
0.04%
DWF5
2
0.04%
HMGS
2
0.04%
HDR/IspH
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
DWF7
1
0.02%
DXR
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 533 | 19 | BAHD (205) | View species results |
| Alkaloid pathway | 450 | 23 | 7DLGT (73) | View species results |
| Flavonoid pathway | 296 | 14 | UFGT (175) | View species results |
| Phenylpropanoid pathway | 291 | 12 | POD (92) | View species results |
| Rosmarinic acid pathway | 149 | 7 | C4H (69) | View species results |
| Steroid pathway | 133 | 13 | SMT1/SMT2/SMT3 (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1945 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 371 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Oruf09G0001630.4 | Alkaloid | NMT | medium | pass |
| Oruf09G0005300.1 | Alkaloid | NMT | low | borderline |
| Oruf09G0005300.2 | Alkaloid | NMT | low | borderline |
| Oruf09G0007610.1 | Alkaloid | NMT | medium | pass |
| Oruf09G0007610.2 | Alkaloid | NMT | medium | pass |
| Oruf09G0007740.1 | Alkaloid | NMT | low | borderline |
| Oruf09G0010370.1 | Alkaloid | NMT | low | borderline |
| Oruf09G0010550.1 | Alkaloid | NMT | medium | pass |
| Oruf09G0020670.1 | Alkaloid | NMT | low | borderline |
| Oruf10G0014720.1 | Alkaloid | NMT | medium | borderline |
| Oruf11G0001820.1 | Alkaloid | NMT | medium | pass |
| Oruf11G0009040.2 | Alkaloid | NMT | medium | borderline |
| Oruf11G0011010.1 | Alkaloid | NMT | low | borderline |
| Oruf11G0020310.1 | Alkaloid | NMT | medium | pass |
| Oruf11G0020310.2 | Alkaloid | NMT | medium | pass |
| Oruf12G0001910.1 | Alkaloid | NMT | medium | pass |
| Oruf12G0006480.1 | Alkaloid | NMT | medium | pass |
| Oruf12G0006480.2 | Alkaloid | NMT | medium | borderline |
| Oruf12G0006480.3 | Alkaloid | NMT | medium | borderline |
| Oruf12G0006530.1 | Alkaloid | NMT | medium | borderline |
| Oruf12G0006530.2 | Alkaloid | NMT | medium | borderline |
| Oruf12G0007880.1 | Alkaloid | NMT | medium | borderline |
| Oruf12G0020710.1 | Alkaloid | NMT | low | borderline |
| Oruf12G0020710.2 | Alkaloid | NMT | low | borderline |
| Oruf12G0020710.3 | Alkaloid | NMT | low | borderline |
| Oruf12G0020710.4 | Alkaloid | NMT | low | borderline |
| Oruf02G0017390.1 | Alkaloid | ODC | medium | pass |
| Oruf03G0028980.1 | Alkaloid | ODC | medium | pass |
| Oruf04G0001940.1 | Alkaloid | ODC | medium | pass |
| Oruf09G0019550.1 | Alkaloid | ODC | medium | pass |
| Oruf01G0000350.1 | Alkaloid | PMT | low | borderline |
| Oruf01G0000350.2 | Alkaloid | PMT | low | borderline |
| Oruf01G0005410.1 | Alkaloid | PMT | medium | pass |
| Oruf01G0005990.1 | Alkaloid | PMT | medium | pass |
| Oruf01G0016190.1 | Alkaloid | PMT | medium | pass |
| Oruf01G0025250.1 | Alkaloid | PMT | medium | pass |
| Oruf01G0025260.1 | Alkaloid | PMT | medium | pass |
| Oruf02G0010070.1 | Alkaloid | PMT | medium | pass |
| Oruf02G0010840.1 | Alkaloid | PMT | medium | borderline |
| Oruf02G0026240.1 | Alkaloid | PMT | low | borderline |
| Oruf03G0031590.1 | Alkaloid | PMT | low | borderline |
| Oruf04G0003260.1 | Alkaloid | PMT | medium | pass |
| Oruf04G0003370.1 | Alkaloid | PMT | medium | pass |
| Oruf04G0004310.1 | Alkaloid | PMT | medium | pass |
| Oruf05G0002580.1 | Alkaloid | PMT | medium | pass |
| Oruf05G0005510.1 | Alkaloid | PMT | medium | pass |
| Oruf05G0010440.1 | Alkaloid | PMT | medium | pass |
| Oruf05G0012010.1 | Alkaloid | PMT | medium | pass |
| Oruf06G0005620.1 | Alkaloid | PMT | low | borderline |
| Oruf06G0005640.1 | Alkaloid | PMT | low | borderline |