PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Oruf10G0017270.1 Alkaloid T3O medium pass
Oruf10G0017280.1 Alkaloid T3O medium pass
Oruf11G0001140.1 Alkaloid T3O medium pass
Oruf11G0002600.1 Alkaloid T3O medium pass
Oruf11G0003200.1 Alkaloid T3O low borderline
Oruf11G0013780.1 Alkaloid T3O medium borderline
Oruf11G0022270.1 Alkaloid T3O medium borderline
Oruf12G0001290.1 Alkaloid T3O medium pass
Oruf12G0002690.1 Alkaloid T3O medium pass
Oruf12G0006500.1 Alkaloid T3O medium borderline
Oruf12G0008780.1 Alkaloid T3O medium borderline
Oruf12G0014790.1 Alkaloid T3O medium borderline
Oruf12G0018820.1 Alkaloid T3O medium borderline
Oruf12G0022410.1 Alkaloid T3O medium borderline
Oruf02G0020590.1 Alkaloid TDC low borderline
Oruf04G0001840.1 Alkaloid TDC low borderline
Oruf10G0000270.1 Alkaloid TDC low borderline
Oruf11G0013960.1 Alkaloid TDC low borderline
Oruf01G0045790.1 Alkaloid TRI/TRII low borderline
Oruf02G0018320.1 Alkaloid TRI/TRII medium pass
Oruf02G0026730.1 Alkaloid TRI/TRII low borderline
Oruf03G0012260.1 Alkaloid TRI/TRII low borderline
Oruf03G0012260.2 Alkaloid TRI/TRII low borderline
Oruf03G0012260.3 Alkaloid TRI/TRII medium pass
Oruf03G0012270.1 Alkaloid TRI/TRII medium pass
Oruf03G0014660.1 Alkaloid TRI/TRII medium pass
Oruf03G0028950.1 Alkaloid TRI/TRII low borderline
Oruf03G0035340.1 Alkaloid TRI/TRII low borderline
Oruf03G0039780.1 Alkaloid TRI/TRII medium pass
Oruf03G0041420.1 Alkaloid TRI/TRII medium pass
Oruf04G0003540.1 Alkaloid TRI/TRII medium pass
Oruf04G0003550.1 Alkaloid TRI/TRII medium pass
Oruf04G0006530.1 Alkaloid TRI/TRII low borderline
Oruf04G0010660.1 Alkaloid TRI/TRII medium pass
Oruf04G0012600.1 Alkaloid TRI/TRII medium pass
Oruf04G0015960.1 Alkaloid TRI/TRII low borderline
Oruf04G0021050.1 Alkaloid TRI/TRII low borderline
Oruf05G0002800.1 Alkaloid TRI/TRII low borderline
Oruf06G0005630.1 Alkaloid TRI/TRII low borderline
Oruf07G0019230.1 Alkaloid TRI/TRII low borderline
Oruf07G0026140.1 Alkaloid TRI/TRII low borderline
Oruf07G0026140.2 Alkaloid TRI/TRII low borderline
Oruf07G0026160.1 Alkaloid TRI/TRII low borderline
Oruf07G0026160.2 Alkaloid TRI/TRII low borderline
Oruf07G0026160.3 Alkaloid TRI/TRII low borderline
Oruf07G0026160.4 Alkaloid TRI/TRII low borderline
Oruf07G0027910.1 Alkaloid TRI/TRII medium pass
Oruf09G0001560.1 Alkaloid TRI/TRII medium pass
Oruf09G0001560.2 Alkaloid TRI/TRII medium pass
Oruf09G0013720.1 Alkaloid TRI/TRII medium borderline