PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Oruf04G0006680.1 Alkaloid 7DLGT low borderline
Oruf04G0006690.1 Alkaloid 7DLGT low borderline
Oruf04G0006700.1 Alkaloid 7DLGT low borderline
Oruf04G0006750.1 Alkaloid 7DLGT low borderline
Oruf04G0006780.1 Alkaloid 7DLGT low borderline
Oruf04G0006800.1 Alkaloid 7DLGT low borderline
Oruf04G0008030.1 Alkaloid 7DLGT low borderline
Oruf04G0008490.1 Alkaloid 7DLGT medium pass
Oruf04G0008500.1 Alkaloid 7DLGT medium pass
Oruf04G0008560.1 Alkaloid 7DLGT low borderline
Oruf04G0008560.2 Alkaloid 7DLGT low borderline
Oruf04G0008560.3 Alkaloid 7DLGT medium pass
Oruf04G0008560.4 Alkaloid 7DLGT low borderline
Oruf04G0008580.1 Alkaloid 7DLGT medium pass
Oruf04G0008680.1 Alkaloid 7DLGT medium pass
Oruf04G0015590.1 Alkaloid 7DLGT medium pass
Oruf04G0019340.1 Alkaloid 7DLGT medium pass
Oruf04G0020480.1 Alkaloid 7DLGT low borderline
Oruf04G0020490.1 Alkaloid 7DLGT low borderline
Oruf04G0020580.1 Alkaloid 7DLGT low borderline
Oruf04G0020580.2 Alkaloid 7DLGT low borderline
Oruf04G0022690.1 Alkaloid 7DLGT medium pass
Oruf04G0023250.1 Alkaloid 7DLGT medium pass
Oruf04G0023270.1 Alkaloid 7DLGT medium pass
Oruf04G0028990.1 Alkaloid 7DLGT low borderline
Oruf05G0005360.1 Alkaloid 7DLGT low borderline
Oruf05G0005380.1 Alkaloid 7DLGT low borderline
Oruf05G0005550.1 Alkaloid 7DLGT low borderline
Oruf05G0007710.1 Alkaloid 7DLGT low borderline
Oruf05G0022310.1 Alkaloid 7DLGT low borderline
Oruf05G0022790.1 Alkaloid 7DLGT low borderline
Oruf05G0022800.1 Alkaloid 7DLGT low borderline
Oruf05G0022800.2 Alkaloid 7DLGT low borderline
Oruf05G0024600.1 Alkaloid 7DLGT medium pass
Oruf05G0024610.1 Alkaloid 7DLGT medium pass
Oruf05G0024630.1 Alkaloid 7DLGT low borderline
Oruf05G0024640.1 Alkaloid 7DLGT medium pass
Oruf05G0024650.1 Alkaloid 7DLGT low borderline
Oruf05G0024660.1 Alkaloid 7DLGT low borderline
Oruf05G0024680.1 Alkaloid 7DLGT medium pass
Oruf05G0026540.1 Alkaloid 7DLGT low borderline
Oruf06G0005830.1 Alkaloid 7DLGT low borderline
Oruf06G0005840.1 Alkaloid 7DLGT low borderline
Oruf06G0006080.1 Alkaloid 7DLGT medium pass
Oruf06G0007490.8 Alkaloid 7DLGT low borderline
Oruf06G0007830.1 Alkaloid 7DLGT medium pass
Oruf06G0010910.1 Alkaloid 7DLGT low borderline
Oruf06G0011380.1 Alkaloid 7DLGT low borderline
Oruf06G0011390.1 Alkaloid 7DLGT medium pass
Oruf06G0011400.1 Alkaloid 7DLGT low borderline