PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Oruf03G0021410.1 Flavonoid ANR low borderline
Oruf04G0027790.1 Flavonoid ANR medium borderline
Oruf04G0027800.1 Flavonoid ANR medium borderline
Oruf05G0028580.1 Flavonoid ANR low borderline
Oruf05G0028580.2 Flavonoid ANR low borderline
Oruf06G0024400.2 Flavonoid ANR medium pass
Oruf06G0024400.5 Flavonoid ANR medium pass
Oruf06G0026620.1 Flavonoid ANR medium borderline
Oruf07G0021850.1 Flavonoid ANR medium borderline
Oruf07G0022070.1 Flavonoid ANR low borderline
Oruf07G0022070.2 Flavonoid ANR low borderline
Oruf07G0022070.3 Flavonoid ANR low borderline
Oruf08G0005510.1 Flavonoid ANR medium borderline
Oruf08G0005510.2 Flavonoid ANR medium borderline
Oruf08G0005510.3 Flavonoid ANR medium borderline
Oruf08G0009870.1 Flavonoid ANR medium borderline
Oruf08G0017940.1 Flavonoid ANR medium borderline
Oruf09G0011030.1 Flavonoid ANR medium borderline
Oruf09G0015910.1 Flavonoid ANR low borderline
Oruf10G0002470.1 Flavonoid ANR low borderline
Oruf10G0013910.1 Flavonoid ANR medium borderline
Oruf10G0020620.1 Flavonoid ANR low borderline
Oruf11G0009630.1 Flavonoid ANR low borderline
Oruf01G0007500.1 Flavonoid ANS/LDOX medium borderline
Oruf02G0026080.1 Flavonoid ANS/LDOX medium borderline
Oruf06G0005050.1 Flavonoid ANS/LDOX medium borderline
Oruf06G0005060.2 Flavonoid ANS/LDOX medium borderline
Oruf06G0005060.3 Flavonoid ANS/LDOX medium borderline
Oruf06G0005060.4 Flavonoid ANS/LDOX medium borderline
Oruf06G0022860.1 Flavonoid ANS/LDOX medium pass
Oruf09G0013150.1 Flavonoid ANS/LDOX medium borderline
Oruf09G0013150.2 Flavonoid ANS/LDOX medium borderline
Oruf09G0013150.3 Flavonoid ANS/LDOX medium borderline
Oruf10G0005500.1 Flavonoid ANS/LDOX low borderline
Oruf10G0019360.1 Flavonoid ANS/LDOX medium borderline
Oruf10G0019360.2 Flavonoid ANS/LDOX medium borderline
Oruf11G0012540.1 Flavonoid ANS/LDOX medium borderline
Oruf01G0030600.1 Flavonoid C4H medium borderline
Oruf01G0038280.1 Flavonoid C4H medium pass
Oruf02G0016580.1 Flavonoid C4H medium borderline
Oruf02G0016600.1 Flavonoid C4H low borderline
Oruf05G0012400.1 Flavonoid C4H medium pass
Oruf06G0010610.1 Flavonoid C4H medium borderline
Oruf06G0018480.1 Flavonoid C4H low borderline
Oruf06G0019860.1 Flavonoid C4H medium borderline
Oruf06G0019860.2 Flavonoid C4H medium borderline
Oruf07G0025260.1 Flavonoid C4H medium borderline
Oruf08G0012910.1 Flavonoid C4H low borderline
Oruf08G0012910.2 Flavonoid C4H low borderline
Oruf03G0040430.1 Flavonoid CHI medium pass