PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Oruf06G0011430.1 Alkaloid 7DLGT low borderline
Oruf06G0011730.1 Alkaloid 7DLGT medium pass
Oruf06G0011780.1 Alkaloid 7DLGT medium pass
Oruf06G0011800.1 Alkaloid 7DLGT low borderline
Oruf06G0011810.1 Alkaloid 7DLGT low borderline
Oruf06G0011840.1 Alkaloid 7DLGT medium pass
Oruf06G0014660.1 Alkaloid 7DLGT medium pass
Oruf06G0020860.1 Alkaloid 7DLGT low borderline
Oruf06G0020870.1 Alkaloid 7DLGT low borderline
Oruf06G0021020.1 Alkaloid 7DLGT low borderline
Oruf06G0021030.1 Alkaloid 7DLGT low borderline
Oruf07G0002800.1 Alkaloid 7DLGT medium pass
Oruf07G0006400.1 Alkaloid 7DLGT low borderline
Oruf07G0006430.1 Alkaloid 7DLGT low borderline
Oruf07G0008440.1 Alkaloid 7DLGT high pass
Oruf07G0008450.1 Alkaloid 7DLGT high pass
Oruf07G0008460.1 Alkaloid 7DLGT low borderline
Oruf07G0008460.2 Alkaloid 7DLGT medium pass
Oruf07G0008470.1 Alkaloid 7DLGT medium pass
Oruf07G0008570.1 Alkaloid 7DLGT medium pass
Oruf07G0008950.1 Alkaloid 7DLGT medium pass
Oruf07G0014860.1 Alkaloid 7DLGT medium pass
Oruf07G0014870.1 Alkaloid 7DLGT medium pass
Oruf07G0014910.1 Alkaloid 7DLGT medium pass
Oruf07G0014950.1 Alkaloid 7DLGT medium pass
Oruf07G0014970.1 Alkaloid 7DLGT medium pass
Oruf07G0015760.1 Alkaloid 7DLGT medium pass
Oruf07G0015780.1 Alkaloid 7DLGT low borderline
Oruf07G0015790.1 Alkaloid 7DLGT medium pass
Oruf07G0015820.1 Alkaloid 7DLGT low borderline
Oruf07G0015970.1 Alkaloid 7DLGT low borderline
Oruf07G0016240.1 Alkaloid 7DLGT low borderline
Oruf07G0016260.1 Alkaloid 7DLGT low borderline
Oruf07G0019440.1 Alkaloid 7DLGT medium pass
Oruf07G0023570.1 Alkaloid 7DLGT medium pass
Oruf07G0025910.1 Alkaloid 7DLGT medium pass
Oruf07G0026680.1 Alkaloid 7DLGT low borderline
Oruf08G0004560.1 Alkaloid 7DLGT medium pass
Oruf08G0004620.1 Alkaloid 7DLGT high pass
Oruf08G0008840.1 Alkaloid 7DLGT low borderline
Oruf08G0012530.1 Alkaloid 7DLGT low borderline
Oruf08G0015720.1 Alkaloid 7DLGT medium pass
Oruf08G0020800.1 Alkaloid 7DLGT low borderline
Oruf08G0020830.1 Alkaloid 7DLGT low borderline
Oruf09G0000940.1 Alkaloid 7DLGT medium pass
Oruf09G0001570.1 Alkaloid 7DLGT low borderline
Oruf09G0004220.1 Alkaloid 7DLGT low borderline
Oruf09G0006450.1 Alkaloid 7DLGT low borderline
Oruf09G0006460.1 Alkaloid 7DLGT low borderline
Oruf09G0008020.1 Alkaloid 7DLGT low borderline