PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Oruf09G0018520.1 Steroid DWF4/CYP90B1 low borderline
Oruf09G0018860.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0000940.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0001950.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0002140.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0003720.1 Steroid DWF4/CYP90B1 low borderline
Oruf10G0005750.1 Steroid DWF4/CYP90B1 low borderline
Oruf11G0001150.1 Steroid DWF4/CYP90B1 medium borderline
Oruf11G0002280.1 Steroid DWF4/CYP90B1 low borderline
Oruf11G0002290.1 Steroid DWF4/CYP90B1 low borderline
Oruf11G0003200.1 Steroid DWF4/CYP90B1 low borderline
Oruf11G0022270.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0001290.4 Steroid DWF4/CYP90B1 medium borderline
Oruf12G0003470.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0006290.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0006500.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0008780.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0018760.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0018820.1 Steroid DWF4/CYP90B1 low borderline
Oruf12G0018830.1 Steroid DWF4/CYP90B1 low borderline
Oruf02G0016470.1 Steroid DWF5 medium borderline
Oruf02G0016470.2 Steroid DWF5 medium pass
Oruf01G0002310.1 Steroid DWF7 medium pass
Oruf01G0016300.1 Steroid FK high pass
Oruf09G0021250.1 Steroid FK high pass
Oruf01G0000230.1 Steroid HYD1 high pass
Oruf01G0000230.2 Steroid HYD1 high pass
Oruf01G0000230.3 Steroid HYD1 high pass
Oruf01G0000230.4 Steroid HYD1 low borderline
Oruf06G0017590.1 Steroid HYD1 medium pass
Oruf01G0006720.1 Steroid ROT3/CYP90C1 medium borderline
Oruf01G0007610.1 Steroid ROT3/CYP90C1 low borderline
Oruf02G0028900.1 Steroid ROT3/CYP90C1 medium borderline
Oruf03G0009350.1 Steroid ROT3/CYP90C1 medium borderline
Oruf03G0041620.1 Steroid ROT3/CYP90C1 medium borderline
Oruf05G0006790.1 Steroid ROT3/CYP90C1 medium borderline
Oruf06G0023170.1 Steroid ROT3/CYP90C1 medium borderline
Oruf07G0010640.1 Steroid ROT3/CYP90C1 medium borderline
Oruf07G0014530.1 Steroid ROT3/CYP90C1 medium borderline
Oruf10G0004370.1 Steroid ROT3/CYP90C1 medium borderline
Oruf10G0006580.1 Steroid ROT3/CYP90C1 low borderline
Oruf10G0006580.2 Steroid ROT3/CYP90C1 low borderline
Oruf10G0016490.1 Steroid ROT3/CYP90C1 medium borderline
Oruf11G0009420.1 Steroid ROT3/CYP90C1 medium borderline
Oruf03G0012670.1 Steroid SMO1/SMO2 medium pass
Oruf03G0012670.2 Steroid SMO1/SMO2 medium pass
Oruf07G0000160.1 Steroid SMO1/SMO2 medium pass
Oruf07G0000160.2 Steroid SMO1/SMO2 medium pass
Oruf07G0000160.3 Steroid SMO1/SMO2 medium pass
Oruf07G0000160.4 Steroid SMO1/SMO2 medium pass