PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

2369
Candidate Protein Records
1852
Pathway-Level Records
5015
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Oruf08G0006000.3 Terpenoid GGPPS medium borderline
Oruf12G0008910.1 Terpenoid GGPPS medium borderline
Oruf12G0008910.2 Terpenoid GGPPS medium borderline
Oruf03G0034180.1 Terpenoid HDR/IspH high pass
Oruf03G0034190.1 Terpenoid HDR/IspH high pass
Oruf02G0024480.1 Terpenoid HDS/IspG high pass
Oruf02G0031460.1 Terpenoid HMGR medium pass
Oruf08G0014640.1 Terpenoid HMGR low borderline
Oruf08G0022540.1 Terpenoid HMGR medium pass
Oruf09G0015930.1 Terpenoid HMGR medium pass
Oruf03G0001230.1 Terpenoid HMGS high pass
Oruf09G0017960.1 Terpenoid HMGS high pass
Oruf05G0017420.1 Terpenoid IDI medium pass
Oruf07G0018350.1 Terpenoid IDI medium pass
Oruf12G0003640.2 Terpenoid IDI low borderline
Oruf01G0042780.1 Terpenoid MCT/IspD high pass
Oruf04G0026560.1 Terpenoid MCT/IspD low borderline
Oruf04G0026560.2 Terpenoid MCT/IspD low borderline
Oruf11G0019410.1 Terpenoid MCT/IspD low borderline
Oruf01G0048520.1 Terpenoid MDS/IspF low borderline
Oruf02G0029210.1 Terpenoid MDS/IspF high pass
Oruf03G0003810.2 Terpenoid MDS/IspF low borderline
Oruf03G0003810.3 Terpenoid MDS/IspF low borderline
Oruf02G0000600.1 Terpenoid MVD medium pass
Oruf02G0000600.2 Terpenoid MVD medium pass
Oruf02G0000760.1 Terpenoid MVD medium pass
Oruf07G0023250.1 Terpenoid MVD low borderline
Oruf08G0022640.1 Terpenoid MVD low borderline
Oruf03G0000960.1 Terpenoid MVK low borderline
Oruf03G0041390.1 Terpenoid MVK low borderline
Oruf06G0003350.1 Terpenoid MVK low borderline
Oruf08G0004740.1 Terpenoid MVK medium pass
Oruf08G0004740.2 Terpenoid MVK medium pass
Oruf08G0008110.3 Terpenoid MVK low borderline
Oruf10G0006250.1 Terpenoid MVK medium pass
Oruf10G0006250.2 Terpenoid MVK medium pass
Oruf10G0006250.3 Terpenoid MVK medium pass
Oruf10G0006250.4 Terpenoid MVK medium pass
Oruf12G0006600.1 Terpenoid MVK low borderline
Oruf03G0011060.1 Terpenoid PMK high pass
Oruf03G0011060.2 Terpenoid PMK medium pass
Oruf03G0011060.3 Terpenoid PMK medium pass
Oruf03G0031070.1 Terpenoid PMK medium pass
Oruf01G0015460.1 Terpenoid TPS medium pass
Oruf01G0025000.1 Terpenoid TPS medium pass
Oruf02G0001630.1 Terpenoid TPS medium pass
Oruf02G0012290.1 Terpenoid TPS medium pass
Oruf02G0016020.1 Terpenoid TPS medium pass
Oruf02G0016030.1 Terpenoid TPS medium pass
Oruf02G0022200.1 Terpenoid TPS medium pass