PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Rsat01G0029440 Alkaloid 16OMT medium borderline
Rsat02G0008800 Alkaloid 16OMT medium borderline
Rsat02G0008830 Alkaloid 16OMT medium borderline
Rsat02G0008840 Alkaloid 16OMT medium borderline
Rsat02G0050150 Alkaloid 16OMT medium borderline
Rsat02G0050160 Alkaloid 16OMT medium borderline
Rsat02G0050170 Alkaloid 16OMT medium borderline
Rsat02G0050290 Alkaloid 16OMT medium borderline
Rsat03G0013010 Alkaloid 16OMT medium borderline
Rsat03G0024510 Alkaloid 16OMT medium borderline
Rsat04G0002430 Alkaloid 16OMT medium borderline
Rsat04G0006250 Alkaloid 16OMT medium borderline
Rsat06G0010320 Alkaloid 16OMT medium borderline
Rsat06G0017750 Alkaloid 16OMT medium borderline
Rsat06G0017760 Alkaloid 16OMT medium borderline
Rsat06G0017770 Alkaloid 16OMT medium borderline
Rsat06G0017780 Alkaloid 16OMT medium borderline
Rsat07G0010350 Alkaloid 16OMT medium borderline
Rsat07G0010370 Alkaloid 16OMT medium borderline
Rsat08G0009300 Alkaloid 16OMT medium borderline
Rsat08G0009310 Alkaloid 16OMT medium borderline
Rsat08G0010940 Alkaloid 16OMT medium borderline
Rsat08G0013890 Alkaloid 16OMT medium borderline
Rsat08G0013900 Alkaloid 16OMT medium borderline
Rsat08G0015470 Alkaloid 16OMT medium borderline
Rsat08G0015510 Alkaloid 16OMT medium borderline
Rsat08G0024680 Alkaloid 16OMT medium borderline
Rsat09G0012690 Alkaloid 16OMT medium borderline
Rsat09G0013480 Alkaloid 16OMT medium borderline
Rsat09G0013490 Alkaloid 16OMT medium borderline
Rsat09G0030810 Alkaloid 16OMT medium borderline
Rsat09G0039560 Alkaloid 16OMT medium borderline
RsatScaffold14120002240 Alkaloid 16OMT medium borderline
RsatScaffold3010008870 Alkaloid 16OMT medium borderline
Rsat01G0003140 Alkaloid 7DLGT medium pass
Rsat01G0007720 Alkaloid 7DLGT low borderline
Rsat01G0007730 Alkaloid 7DLGT low borderline
Rsat01G0007850 Alkaloid 7DLGT low borderline
Rsat01G0007860 Alkaloid 7DLGT medium pass
Rsat01G0007870 Alkaloid 7DLGT medium pass
Rsat01G0007880 Alkaloid 7DLGT medium pass
Rsat01G0011270 Alkaloid 7DLGT low borderline
Rsat01G0012340 Alkaloid 7DLGT low borderline
Rsat01G0012350 Alkaloid 7DLGT low borderline
Rsat01G0012570 Alkaloid 7DLGT low borderline
Rsat01G0012580 Alkaloid 7DLGT low borderline
Rsat01G0014680 Alkaloid 7DLGT medium pass
Rsat01G0017720 Alkaloid 7DLGT low borderline
Rsat01G0017730 Alkaloid 7DLGT medium pass
Rsat01G0020250 Alkaloid 7DLGT medium pass