PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
Reset
Gene Pathway Family Confidence Status Best Target
Rsat01G0005350 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat01G0005620 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Rsat01G0017300 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Rsat01G0020660 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat01G0021640 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat01G0037330 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Rsat02G0011440 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat02G0018040 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Rsat02G0018520 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat02G0023910 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Rsat02G0023920 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Rsat02G0026260 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Rsat03G0010960 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat03G0010970 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat03G0021090 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat04G0036670 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat04G0050230 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Rsat04G0050480 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat05G0011660 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat05G0013620 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Rsat06G0013850 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Rsat06G0025090 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Rsat07G0001760 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Rsat09G0011540 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Rsat09G0016550 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Rsat09G0037290 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH