PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Rsat01G0003140 Flavonoid UFGT medium pass
Rsat01G0007720 Flavonoid UFGT medium pass
Rsat01G0007730 Flavonoid UFGT medium pass
Rsat01G0007850 Flavonoid UFGT medium pass
Rsat01G0007860 Flavonoid UFGT medium pass
Rsat01G0007870 Flavonoid UFGT high pass
Rsat01G0007880 Flavonoid UFGT medium pass
Rsat01G0011270 Flavonoid UFGT low borderline
Rsat01G0012340 Flavonoid UFGT medium pass
Rsat01G0012350 Flavonoid UFGT medium pass
Rsat01G0012570 Flavonoid UFGT medium pass
Rsat01G0012580 Flavonoid UFGT medium pass
Rsat01G0014680 Flavonoid UFGT medium pass
Rsat01G0017720 Flavonoid UFGT medium pass
Rsat01G0017730 Flavonoid UFGT medium pass
Rsat01G0020250 Flavonoid UFGT high pass
Rsat01G0020260 Flavonoid UFGT high pass
Rsat01G0020280 Flavonoid UFGT medium pass
Rsat01G0028890 Flavonoid UFGT medium pass
Rsat01G0028900 Flavonoid UFGT medium pass
Rsat01G0028910 Flavonoid UFGT medium pass
Rsat01G0032680 Flavonoid UFGT medium pass
Rsat01G0035440 Flavonoid UFGT medium pass
Rsat01G0042170 Flavonoid UFGT high pass
Rsat01G0042180 Flavonoid UFGT medium pass
Rsat01G0047140 Flavonoid UFGT low borderline
Rsat01G0054000 Flavonoid UFGT high pass
Rsat01G0054200 Flavonoid UFGT medium pass
Rsat01G0054220 Flavonoid UFGT high pass
Rsat01G0054320 Flavonoid UFGT medium pass
Rsat02G0002170 Flavonoid UFGT high pass
Rsat02G0004270 Flavonoid UFGT medium pass
Rsat02G0004280 Flavonoid UFGT medium pass
Rsat02G0004290 Flavonoid UFGT medium pass
Rsat02G0018330 Flavonoid UFGT medium pass
Rsat02G0018410 Flavonoid UFGT high pass
Rsat02G0018430 Flavonoid UFGT low borderline
Rsat02G0018550 Flavonoid UFGT high pass
Rsat02G0018560 Flavonoid UFGT high pass
Rsat02G0019570 Flavonoid UFGT high pass
Rsat02G0019590 Flavonoid UFGT high pass
Rsat02G0027770 Flavonoid UFGT high pass
Rsat02G0027780 Flavonoid UFGT high pass
Rsat02G0030880 Flavonoid UFGT high pass
Rsat02G0034980 Flavonoid UFGT medium pass
Rsat02G0034990 Flavonoid UFGT medium pass
Rsat02G0037030 Flavonoid UFGT medium pass
Rsat02G0037040 Flavonoid UFGT medium pass
Rsat02G0039030 Flavonoid UFGT low borderline
Rsat02G0050710 Flavonoid UFGT medium pass