PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Rsat01G0010340 Terpenoid AACT medium borderline
Rsat01G0021820 Terpenoid AACT medium pass
Rsat01G0040560 Terpenoid AACT medium pass
Rsat01G0045210 Terpenoid AACT medium borderline
Rsat01G0056100 Terpenoid AACT low borderline
Rsat04G0019500 Terpenoid AACT medium borderline
Rsat04G0045710 Terpenoid AACT medium borderline
Rsat05G0015900 Terpenoid AACT low borderline
Rsat07G0018430 Terpenoid AACT medium pass
Rsat08G0010090 Terpenoid AACT medium pass
Rsat09G0006850 Terpenoid AACT medium borderline
Rsat09G0009280 Terpenoid AACT medium borderline
Rsat01G0002080 Terpenoid BAHD medium pass
Rsat01G0005350 Terpenoid BAHD medium pass
Rsat01G0005620 Terpenoid BAHD medium pass
Rsat01G0006200 Terpenoid BAHD medium pass
Rsat01G0006900 Terpenoid BAHD medium pass
Rsat01G0010020 Terpenoid BAHD low borderline
Rsat01G0015080 Terpenoid BAHD medium pass
Rsat01G0015090 Terpenoid BAHD medium pass
Rsat01G0015250 Terpenoid BAHD medium pass
Rsat01G0015260 Terpenoid BAHD medium pass
Rsat01G0015270 Terpenoid BAHD medium pass
Rsat01G0017300 Terpenoid BAHD medium pass
Rsat01G0017360 Terpenoid BAHD medium pass
Rsat01G0018710 Terpenoid BAHD medium pass
Rsat01G0019670 Terpenoid BAHD low borderline
Rsat01G0020660 Terpenoid BAHD medium pass
Rsat01G0021640 Terpenoid BAHD medium pass
Rsat01G0021700 Terpenoid BAHD medium pass
Rsat01G0022050 Terpenoid BAHD medium pass
Rsat01G0023710 Terpenoid BAHD medium pass
Rsat01G0025450 Terpenoid BAHD low borderline
Rsat01G0027670 Terpenoid BAHD medium pass
Rsat01G0029630 Terpenoid BAHD medium pass
Rsat01G0034720 Terpenoid BAHD medium pass
Rsat01G0036170 Terpenoid BAHD medium pass
Rsat01G0037330 Terpenoid BAHD medium pass
Rsat01G0037760 Terpenoid BAHD low borderline
Rsat01G0041980 Terpenoid BAHD medium pass
Rsat01G0043240 Terpenoid BAHD medium pass
Rsat01G0044500 Terpenoid BAHD medium pass
Rsat01G0044590 Terpenoid BAHD medium pass
Rsat01G0045740 Terpenoid BAHD low borderline
Rsat01G0047440 Terpenoid BAHD medium pass
Rsat01G0052190 Terpenoid BAHD medium pass
Rsat01G0052900 Terpenoid BAHD low borderline
Rsat01G0054050 Terpenoid BAHD medium pass
Rsat01G0056050 Terpenoid BAHD medium pass
Rsat01G0057110 Terpenoid BAHD low borderline