PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
Rsat01G0016570 Phenylpropanoid CAD low borderline
Rsat01G0016670 Phenylpropanoid CAD medium pass
Rsat01G0018150 Phenylpropanoid CAD medium pass
Rsat02G0001330 Phenylpropanoid CAD medium pass
Rsat02G0001340 Phenylpropanoid CAD medium pass
Rsat02G0004190 Phenylpropanoid CAD medium pass
Rsat02G0017500 Phenylpropanoid CAD low borderline
Rsat02G0045300 Phenylpropanoid CAD medium borderline
Rsat03G0007990 Phenylpropanoid CAD low borderline
Rsat03G0008000 Phenylpropanoid CAD medium borderline
Rsat03G0028060 Phenylpropanoid CAD medium pass
Rsat03G0032150 Phenylpropanoid CAD low borderline
Rsat03G0033310 Phenylpropanoid CAD low borderline
Rsat04G0000580 Phenylpropanoid CAD medium pass
Rsat04G0006510 Phenylpropanoid CAD medium borderline
Rsat04G0011950 Phenylpropanoid CAD low borderline
Rsat04G0032140 Phenylpropanoid CAD medium borderline
Rsat04G0045880 Phenylpropanoid CAD low borderline
Rsat05G0011730 Phenylpropanoid CAD low borderline
Rsat05G0018270 Phenylpropanoid CAD medium borderline
Rsat05G0029360 Phenylpropanoid CAD medium borderline
Rsat05G0034570 Phenylpropanoid CAD low borderline
Rsat06G0002930 Phenylpropanoid CAD medium borderline
Rsat06G0010630 Phenylpropanoid CAD medium borderline
Rsat06G0015580 Phenylpropanoid CAD low borderline
Rsat06G0029600 Phenylpropanoid CAD medium borderline
Rsat06G0029610 Phenylpropanoid CAD medium borderline
Rsat06G0029620 Phenylpropanoid CAD medium borderline
Rsat07G0010460 Phenylpropanoid CAD low borderline
Rsat07G0016760 Phenylpropanoid CAD low borderline
Rsat07G0030430 Phenylpropanoid CAD medium borderline
Rsat07G0030560 Phenylpropanoid CAD medium borderline
Rsat08G0002650 Phenylpropanoid CAD medium borderline
Rsat08G0007880 Phenylpropanoid CAD medium pass
Rsat08G0018540 Phenylpropanoid CAD medium borderline
Rsat08G0019490 Phenylpropanoid CAD medium pass
Rsat08G0019500 Phenylpropanoid CAD medium pass
Rsat09G0002300 Phenylpropanoid CAD low borderline
Rsat09G0004970 Phenylpropanoid CAD low borderline
Rsat09G0012260 Phenylpropanoid CAD low borderline
Rsat09G0020560 Phenylpropanoid CAD low borderline
Rsat09G0035590 Phenylpropanoid CAD low borderline
Rsat09G0039330 Phenylpropanoid CAD low borderline
Rsat09G0041010 Phenylpropanoid CAD low borderline
RsatScaffold13750002110 Phenylpropanoid CAD medium pass
RsatScaffold32060009600 Phenylpropanoid CAD medium pass