PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
Rsat01G0017700 Alkaloid G8O/G8H medium borderline
Rsat01G0018130 Alkaloid G8O/G8H medium borderline
Rsat01G0026730 Alkaloid G8O/G8H medium borderline
Rsat01G0042910 Alkaloid G8O/G8H low borderline
Rsat01G0042920 Alkaloid G8O/G8H medium borderline
Rsat01G0044010 Alkaloid G8O/G8H medium borderline
Rsat01G0046580 Alkaloid G8O/G8H medium borderline
Rsat02G0001720 Alkaloid G8O/G8H medium borderline
Rsat02G0014990 Alkaloid G8O/G8H medium borderline
Rsat02G0018180 Alkaloid G8O/G8H medium borderline
Rsat02G0029510 Alkaloid G8O/G8H medium borderline
Rsat02G0029520 Alkaloid G8O/G8H medium borderline
Rsat02G0036210 Alkaloid G8O/G8H medium borderline
Rsat02G0036240 Alkaloid G8O/G8H medium borderline
Rsat03G0001950 Alkaloid G8O/G8H medium borderline
Rsat03G0011270 Alkaloid G8O/G8H low borderline
Rsat03G0019520 Alkaloid G8O/G8H low borderline
Rsat04G0001220 Alkaloid G8O/G8H medium borderline
Rsat04G0016700 Alkaloid G8O/G8H medium borderline
Rsat04G0016710 Alkaloid G8O/G8H medium borderline
Rsat04G0016720 Alkaloid G8O/G8H medium borderline
Rsat04G0022340 Alkaloid G8O/G8H medium borderline
Rsat04G0050910 Alkaloid G8O/G8H medium borderline
Rsat04G0053930 Alkaloid G8O/G8H medium borderline
Rsat04G0061150 Alkaloid G8O/G8H low borderline
Rsat04G0061170 Alkaloid G8O/G8H medium borderline
Rsat05G0007890 Alkaloid G8O/G8H low borderline
Rsat05G0009800 Alkaloid G8O/G8H medium pass
Rsat05G0043570 Alkaloid G8O/G8H medium pass
Rsat07G0011600 Alkaloid G8O/G8H medium borderline
Rsat08G0006290 Alkaloid G8O/G8H medium borderline
Rsat09G0002600 Alkaloid G8O/G8H medium borderline
Rsat09G0003600 Alkaloid G8O/G8H medium borderline
Rsat09G0032320 Alkaloid G8O/G8H medium borderline
RsatScaffold27160008020 Alkaloid G8O/G8H medium borderline
RsatScaffold5350015400 Alkaloid G8O/G8H medium borderline
RsatScaffold55440015750 Alkaloid G8O/G8H medium borderline
RsatScaffold61520016710 Alkaloid G8O/G8H medium borderline
RsatScaffold7630018450 Alkaloid G8O/G8H low borderline