PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
Rsat01G0005230 Phenylpropanoid LAC medium pass
Rsat01G0006930 Phenylpropanoid LAC medium pass
Rsat01G0012320 Phenylpropanoid LAC medium pass
Rsat01G0012920 Phenylpropanoid LAC medium pass
Rsat01G0014930 Phenylpropanoid LAC low borderline
Rsat01G0044820 Phenylpropanoid LAC medium pass
Rsat01G0050350 Phenylpropanoid LAC low borderline
Rsat02G0016400 Phenylpropanoid LAC low borderline
Rsat02G0024740 Phenylpropanoid LAC medium pass
Rsat02G0025670 Phenylpropanoid LAC medium pass
Rsat02G0026150 Phenylpropanoid LAC medium pass
Rsat02G0026230 Phenylpropanoid LAC medium pass
Rsat02G0031360 Phenylpropanoid LAC medium pass
Rsat02G0032500 Phenylpropanoid LAC medium pass
Rsat02G0032510 Phenylpropanoid LAC low borderline
Rsat02G0049170 Phenylpropanoid LAC low borderline
Rsat03G0000380 Phenylpropanoid LAC medium pass
Rsat03G0000400 Phenylpropanoid LAC medium pass
Rsat04G0000810 Phenylpropanoid LAC medium pass
Rsat04G0019580 Phenylpropanoid LAC medium pass
Rsat04G0043720 Phenylpropanoid LAC medium pass
Rsat04G0049070 Phenylpropanoid LAC medium pass
Rsat04G0050350 Phenylpropanoid LAC medium pass
Rsat04G0055600 Phenylpropanoid LAC medium pass
Rsat05G0050720 Phenylpropanoid LAC medium pass
Rsat05G0052230 Phenylpropanoid LAC medium pass
Rsat07G0020570 Phenylpropanoid LAC medium pass
Rsat07G0020580 Phenylpropanoid LAC medium pass
Rsat07G0020590 Phenylpropanoid LAC medium pass
Rsat07G0021920 Phenylpropanoid LAC medium pass
Rsat07G0023520 Phenylpropanoid LAC medium pass
Rsat07G0024480 Phenylpropanoid LAC medium pass
Rsat08G0026090 Phenylpropanoid LAC medium pass
Rsat09G0000570 Phenylpropanoid LAC low borderline
Rsat09G0033530 Phenylpropanoid LAC medium pass
Rsat09G0034380 Phenylpropanoid LAC medium pass
RsatScaffold3740012210 Phenylpropanoid LAC low borderline