PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status Best Target
Rsat01G0002430 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat01G0009340 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat01G0011910 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat01G0011930 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat01G0015580 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat01G0022370 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat01G0022380 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat01G0022730 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat01G0025140 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat01G0047220 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat01G0049060 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat01G0052020 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat01G0059500 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat01G0059930 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0010610 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0010670 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat02G0012840 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0017840 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat02G0021980 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0021990 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0024180 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0024670 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0035200 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0036030 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat02G0040820 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0051770 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat02G0051780 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat03G0002480 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat03G0008470 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat03G0010010 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat03G0010020 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat03G0010030 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat03G0010040 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat03G0010050 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat03G0017390 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat03G0033100 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat03G0033120 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat04G0007410 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat04G0007530 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat04G0013500 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat04G0018390 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat04G0029040 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat04G0044110 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat04G0046720 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat04G0048150 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat04G0053530 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat04G0060020 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
Rsat05G0004960 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat05G0005310 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
Rsat05G0007420 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO