PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Gene Pathway Family Confidence Status
Rsat01G0000730 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0001000 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0001660 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0001940 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0001960 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0003810 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0009190 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0009390 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0010780 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0012110 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0012950 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0013870 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0014260 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0015220 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0015230 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0016760 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0017690 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0017700 Phenylpropanoid C3'H/CYP98A high pass
Rsat01G0018130 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0018170 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0021390 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0023030 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0026670 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0026680 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0026710 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0026720 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0026740 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0026930 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0039090 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0042800 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0042810 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0042840 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0042850 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0042860 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0042870 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0042880 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0042890 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0042900 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0042910 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0042920 Phenylpropanoid C3'H/CYP98A medium pass
Rsat01G0044010 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0044620 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0045160 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0045170 Phenylpropanoid C3'H/CYP98A medium pass
Rsat01G0046580 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0047020 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0047710 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0048950 Phenylpropanoid C3'H/CYP98A low borderline
Rsat01G0051470 Phenylpropanoid C3'H/CYP98A medium borderline
Rsat01G0051480 Phenylpropanoid C3'H/CYP98A medium borderline