PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Rsat01G0001000 Alkaloid IO high pass
Rsat01G0026670 Alkaloid IO medium borderline
Rsat01G0037680 Alkaloid IO low borderline
Rsat02G0001090 Alkaloid IO medium pass
Rsat02G0013010 Alkaloid IO medium borderline
Rsat02G0024260 Alkaloid IO medium borderline
Rsat02G0024750 Alkaloid IO medium borderline
Rsat03G0001460 Alkaloid IO medium borderline
Rsat04G0000890 Alkaloid IO medium pass
Rsat04G0001200 Alkaloid IO medium borderline
Rsat04G0016310 Alkaloid IO medium pass
Rsat04G0039670 Alkaloid IO medium pass
Rsat04G0051750 Alkaloid IO medium borderline
Rsat04G0051760 Alkaloid IO medium borderline
Rsat04G0057200 Alkaloid IO medium borderline
Rsat04G0058060 Alkaloid IO medium borderline
Rsat05G0007860 Alkaloid IO medium borderline
Rsat05G0007880 Alkaloid IO medium borderline
Rsat05G0007900 Alkaloid IO medium borderline
Rsat05G0021020 Alkaloid IO medium borderline
Rsat05G0033150 Alkaloid IO medium borderline
Rsat05G0051280 Alkaloid IO medium borderline
Rsat06G0021180 Alkaloid IO medium borderline
Rsat06G0023900 Alkaloid IO medium borderline
Rsat06G0023950 Alkaloid IO medium borderline
Rsat07G0000200 Alkaloid IO medium borderline
Rsat07G0021810 Alkaloid IO medium pass
Rsat07G0024860 Alkaloid IO medium borderline
Rsat07G0030810 Alkaloid IO medium borderline
Rsat08G0019180 Alkaloid IO medium borderline
Rsat08G0019190 Alkaloid IO medium borderline
Rsat08G0019650 Alkaloid IO medium pass
Rsat08G0033130 Alkaloid IO medium borderline