PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Rsat01G0000960 Alkaloid PYKS low borderline
Rsat01G0013230 Alkaloid PYKS low borderline
Rsat01G0030200 Alkaloid PYKS low borderline
Rsat01G0032500 Alkaloid PYKS low borderline
Rsat01G0033290 Alkaloid PYKS low borderline
Rsat01G0033300 Alkaloid PYKS low borderline
Rsat01G0038060 Alkaloid PYKS low borderline
Rsat01G0038090 Alkaloid PYKS low borderline
Rsat01G0045080 Alkaloid PYKS high pass
Rsat01G0045090 Alkaloid PYKS medium pass
Rsat01G0045300 Alkaloid PYKS low borderline
Rsat02G0003660 Alkaloid PYKS medium pass
Rsat02G0021220 Alkaloid PYKS high pass
Rsat02G0025040 Alkaloid PYKS low borderline
Rsat02G0044940 Alkaloid PYKS low borderline
Rsat02G0046510 Alkaloid PYKS low borderline
Rsat03G0005330 Alkaloid PYKS high pass
Rsat03G0025280 Alkaloid PYKS low borderline
Rsat03G0030720 Alkaloid PYKS high pass
Rsat04G0002560 Alkaloid PYKS high pass
Rsat04G0002820 Alkaloid PYKS low borderline
Rsat04G0013070 Alkaloid PYKS low borderline
Rsat04G0028870 Alkaloid PYKS low borderline
Rsat04G0041640 Alkaloid PYKS low borderline
Rsat04G0042930 Alkaloid PYKS low borderline
Rsat04G0048970 Alkaloid PYKS high pass
Rsat05G0014800 Alkaloid PYKS low borderline
Rsat05G0019920 Alkaloid PYKS low borderline
Rsat05G0054390 Alkaloid PYKS low borderline
Rsat06G0014320 Alkaloid PYKS low borderline
Rsat06G0018990 Alkaloid PYKS low borderline
Rsat06G0024030 Alkaloid PYKS low borderline
Rsat06G0025680 Alkaloid PYKS low borderline
Rsat06G0025690 Alkaloid PYKS low borderline
Rsat06G0028370 Alkaloid PYKS low borderline
Rsat07G0014250 Alkaloid PYKS low borderline
Rsat07G0021570 Alkaloid PYKS low borderline
Rsat07G0030870 Alkaloid PYKS low borderline
Rsat08G0014060 Alkaloid PYKS high pass
Rsat08G0014270 Alkaloid PYKS low borderline
Rsat08G0014280 Alkaloid PYKS low borderline
Rsat08G0030530 Alkaloid PYKS low borderline
Rsat08G0032000 Alkaloid PYKS low borderline
RsatScaffold12770001620 Alkaloid PYKS low borderline
RsatScaffold3590011500 Alkaloid PYKS high pass