PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status
Rsat01G0029440 Phenylpropanoid COMT medium pass
Rsat01G0040130 Phenylpropanoid COMT medium pass
Rsat02G0008800 Phenylpropanoid COMT medium pass
Rsat02G0008830 Phenylpropanoid COMT medium pass
Rsat02G0008840 Phenylpropanoid COMT medium pass
Rsat02G0018280 Phenylpropanoid COMT medium pass
Rsat02G0018290 Phenylpropanoid COMT medium pass
Rsat02G0050140 Phenylpropanoid COMT medium pass
Rsat02G0050150 Phenylpropanoid COMT medium pass
Rsat02G0050160 Phenylpropanoid COMT medium pass
Rsat02G0050170 Phenylpropanoid COMT medium pass
Rsat02G0050290 Phenylpropanoid COMT medium pass
Rsat03G0013010 Phenylpropanoid COMT medium pass
Rsat03G0024510 Phenylpropanoid COMT medium pass
Rsat04G0002430 Phenylpropanoid COMT medium pass
Rsat04G0006250 Phenylpropanoid COMT medium pass
Rsat04G0028430 Phenylpropanoid COMT medium pass
Rsat05G0007840 Phenylpropanoid COMT low borderline
Rsat05G0027350 Phenylpropanoid COMT medium pass
Rsat05G0043620 Phenylpropanoid COMT low borderline
Rsat06G0010320 Phenylpropanoid COMT medium pass
Rsat06G0017750 Phenylpropanoid COMT medium pass
Rsat06G0017760 Phenylpropanoid COMT medium pass
Rsat06G0017770 Phenylpropanoid COMT medium pass
Rsat06G0017780 Phenylpropanoid COMT medium pass
Rsat07G0005860 Phenylpropanoid COMT medium pass
Rsat07G0008690 Phenylpropanoid COMT low borderline
Rsat07G0010350 Phenylpropanoid COMT medium pass
Rsat07G0010360 Phenylpropanoid COMT medium pass
Rsat07G0010370 Phenylpropanoid COMT medium pass
Rsat07G0010670 Phenylpropanoid COMT medium pass
Rsat08G0009300 Phenylpropanoid COMT medium pass
Rsat08G0009310 Phenylpropanoid COMT medium pass
Rsat08G0010940 Phenylpropanoid COMT medium pass
Rsat08G0013890 Phenylpropanoid COMT medium pass
Rsat08G0013900 Phenylpropanoid COMT medium pass
Rsat08G0015470 Phenylpropanoid COMT medium pass
Rsat08G0015510 Phenylpropanoid COMT medium pass
Rsat08G0024680 Phenylpropanoid COMT medium pass
Rsat09G0012690 Phenylpropanoid COMT medium pass
Rsat09G0013480 Phenylpropanoid COMT medium pass
Rsat09G0013490 Phenylpropanoid COMT medium pass
Rsat09G0030810 Phenylpropanoid COMT medium pass
Rsat09G0039560 Phenylpropanoid COMT medium pass
RsatScaffold14120002240 Phenylpropanoid COMT medium pass
RsatScaffold3010008870 Phenylpropanoid COMT medium pass
RsatScaffold3010008880 Phenylpropanoid COMT medium pass
RsatScaffold3010008900 Phenylpropanoid COMT medium pass