PlantSME Plant secondary metabolism enzyme database

Raphanus sativus (raphanus_sativus)

Imported from atlas release summary for Raphanus sativus.

1922
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 609 20 BAHD (266) View species results
Phenylpropanoid pathway 426 11 POD (182) View species results
Alkaloid pathway 406 20 7DLGT (73) View species results
Flavonoid pathway 216 12 UFGT (141) View species results
Rosmarinic acid pathway 156 7 C4H (66) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1916 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 375 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
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Gene Pathway Family Confidence Status
Rsat01G0000730 Alkaloid SLS medium borderline
Rsat01G0001960 Alkaloid SLS medium borderline
Rsat01G0014260 Alkaloid SLS medium borderline
Rsat01G0016760 Alkaloid SLS medium borderline
Rsat01G0017690 Alkaloid SLS medium borderline
Rsat01G0058820 Alkaloid SLS medium borderline
Rsat01G0058850 Alkaloid SLS medium borderline
Rsat02G0000720 Alkaloid SLS medium borderline
Rsat02G0000730 Alkaloid SLS medium borderline
Rsat02G0026670 Alkaloid SLS medium borderline
Rsat02G0042540 Alkaloid SLS medium borderline
Rsat02G0046770 Alkaloid SLS medium borderline
Rsat03G0023790 Alkaloid SLS medium borderline
Rsat03G0023800 Alkaloid SLS medium borderline
Rsat04G0000610 Alkaloid SLS medium borderline
Rsat04G0000620 Alkaloid SLS medium borderline
Rsat04G0012830 Alkaloid SLS medium borderline
Rsat04G0021200 Alkaloid SLS medium borderline
Rsat04G0021360 Alkaloid SLS medium borderline
Rsat04G0021370 Alkaloid SLS medium borderline
Rsat04G0030560 Alkaloid SLS low borderline
Rsat04G0034490 Alkaloid SLS medium borderline
Rsat05G0005770 Alkaloid SLS medium borderline
Rsat05G0047890 Alkaloid SLS medium borderline
Rsat05G0047920 Alkaloid SLS medium borderline
Rsat05G0047930 Alkaloid SLS medium borderline
Rsat05G0047940 Alkaloid SLS medium borderline
Rsat06G0001510 Alkaloid SLS medium borderline
Rsat06G0009940 Alkaloid SLS medium borderline
Rsat06G0020700 Alkaloid SLS medium borderline
Rsat06G0023700 Alkaloid SLS low borderline
Rsat07G0002340 Alkaloid SLS medium borderline
Rsat07G0005730 Alkaloid SLS low borderline
Rsat07G0012990 Alkaloid SLS medium borderline
Rsat08G0009460 Alkaloid SLS medium borderline
Rsat08G0010080 Alkaloid SLS medium borderline
Rsat08G0010710 Alkaloid SLS medium borderline
Rsat08G0019970 Alkaloid SLS medium borderline
Rsat08G0019980 Alkaloid SLS medium borderline
Rsat08G0019990 Alkaloid SLS medium borderline
Rsat08G0026660 Alkaloid SLS medium borderline
Rsat09G0003570 Alkaloid SLS medium borderline
Rsat09G0003610 Alkaloid SLS medium borderline
RsatScaffold22330005360 Alkaloid SLS medium borderline